Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0919
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    27   6.2  
Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 278 SSPE--VVSTMIKYNLDEPEAPSSASGKSSDFRRPASGGIP 162
           SSPE   +S M    LD+ + PSS+S K  + R+P++   P
Sbjct: 14  SSPEGKAMSPMKTQLLDDQQTPSSSSSKRKNLRKPSTDDTP 54


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 296 VASTTFSSPEVVSTMIKYNLDEPEAPSSASGKSSDFRRP 180
           VA    S+ ++ ++   YN+   E+PSS +  +S ++RP
Sbjct: 728 VARQQASTSDMTASQSSYNIKIDESPSSLNSSTSSYKRP 766


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 239 LDEPEAPSSASGKSSDFRRPASGGIP 162
           L  P  PS A GK     RP +GG+P
Sbjct: 111 LPGPAGPSGAPGKPGRPGRPGAGGLP 136


>Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical
           protein K04C1.3 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 242 NLDEPEAPSSASGKSSDFRRPASGGIPHVISYFLQVVL 129
           NL+  ++P S S K       A+    H +S+FL++V+
Sbjct: 4   NLEYEKSPQSFSSKLRSTENQAANHKGHTLSHFLKIVV 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,624
Number of Sequences: 27780
Number of extensions: 206517
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)