BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0919 (447 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 31 0.50 U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 29 1.2 AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 27 6.2 Z70267-4|CAA94210.1| 314|Caenorhabditis elegans Hypothetical pr... 27 8.2 >Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical protein C34B7.4 protein. Length = 617 Score = 30.7 bits (66), Expect = 0.50 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = -2 Query: 278 SSPE--VVSTMIKYNLDEPEAPSSASGKSSDFRRPASGGIP 162 SSPE +S M LD+ + PSS+S K + R+P++ P Sbjct: 14 SSPEGKAMSPMKTQLLDDQQTPSSSSSKRKNLRKPSTDDTP 54 >U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical protein D1044.8 protein. Length = 981 Score = 29.5 bits (63), Expect = 1.2 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = -2 Query: 296 VASTTFSSPEVVSTMIKYNLDEPEAPSSASGKSSDFRRP 180 VA S+ ++ ++ YN+ E+PSS + +S ++RP Sbjct: 728 VARQQASTSDMTASQSSYNIKIDESPSSLNSSTSSYKRP 766 >AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical protein Y41C4A.16 protein. Length = 309 Score = 27.1 bits (57), Expect = 6.2 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 239 LDEPEAPSSASGKSSDFRRPASGGIP 162 L P PS A GK RP +GG+P Sbjct: 111 LPGPAGPSGAPGKPGRPGRPGAGGLP 136 >Z70267-4|CAA94210.1| 314|Caenorhabditis elegans Hypothetical protein K04C1.3 protein. Length = 314 Score = 26.6 bits (56), Expect = 8.2 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -2 Query: 242 NLDEPEAPSSASGKSSDFRRPASGGIPHVISYFLQVVL 129 NL+ ++P S S K A+ H +S+FL++V+ Sbjct: 4 NLEYEKSPQSFSSKLRSTENQAANHKGHTLSHFLKIVV 41 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,335,624 Number of Sequences: 27780 Number of extensions: 206517 Number of successful extensions: 584 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 584 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 777938954 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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