Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0918
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.1  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    28   1.1  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   2.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   4.5  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 596 FTLKG-QAAAPGLSLSECRSFCSFPLSLGHTFSKRAHLLHCGT 471
           F LKG +  +    +  C + C   LS GH    + HL  CGT
Sbjct: 458 FLLKGHERKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGT 500


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 677 LPSEISKAVFGHKIGSSSDVLCV 609
           +PS  SK+VF H I SS + LCV
Sbjct: 414 IPSLFSKSVFSHMITSSLNNLCV 436


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 600 KTKNAKHIGRRTNFMSENGFRNFRRK 677
           +T+N     RRT  + ENGFRN R+K
Sbjct: 94  RTRNRSQTQRRT--LLENGFRNSRKK 117


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 517 NERGKEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAFEISEGSTV 684
           ++   E  D  S  DS   ++      KKRK +  SEE P    K + + +E  TV
Sbjct: 212 SDSSSESGDSDSSSDSESESSS--EDEKKRKAEPASEERPAKITKPSQDSNETCTV 265


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 596 IKNEKRKAHRKKNQFYVRKRLSKFQKEVQ 682
           + N +++  R  NQ  +R + +KF+KEV+
Sbjct: 582 LPNPQKRQKRLSNQVELRNQWAKFEKEVE 610


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 486 SPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRRPDN 307
           S + Y   L +  S  E E+        F       SR +++LLPR +P+     R+P  
Sbjct: 47  SQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQP-- 104

Query: 306 IEQNPHVP 283
              NP +P
Sbjct: 105 ---NPSIP 109


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 459 SARTRTAMEKVSPFRKSMAQREGERAERSAL*QG*PRSSSLSFESK 596
           S  TRT+    S  +KS  +   ++ E S +  G P SSS S  +K
Sbjct: 861 SRETRTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAK 906


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 489 PSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 376
           PSP++  +   ++ + EE  D S   SS FT+S+ PS+
Sbjct: 513 PSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSF-PSA 549


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 444 TTLPTSARTRTAMEKVSPFRKSMAQREGERAERSA 548
           T LP SA   T+     PF  S  ++  E+AER A
Sbjct: 155 TWLPCSAAVSTSSPSSDPFFDSYLEQAFEKAERLA 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,774
Number of Sequences: 5004
Number of extensions: 62256
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)