BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0918 (695 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 29 4.8 SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3 SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 8.3 >SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 134 Score = 29.9 bits (64), Expect = 2.1 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = -3 Query: 354 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIP 181 PR D T+ R ++ P +P++ PC A L K+ LSVGL +PIP Sbjct: 30 PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84 >SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1675 Score = 29.1 bits (62), Expect = 3.6 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = -2 Query: 643 IKLVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLS-ALSPSRWAIL 506 +++++LP CF+ V +LLS R+L+L PC S ++ LSP R +L Sbjct: 210 LRVIVLP-CFSVVVAFLLSPLRVLVL--PCFSVVVAFLLSPLRVLVL 253 >SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) Length = 1301 Score = 28.7 bits (61), Expect = 4.8 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Frame = -1 Query: 650 FGHKIGSSSDVLCVFRFLFTLKGQAAAPGLSLSECRSFCSFPLSLGHTF--SKRAHLLHC 477 FG + G +S + F F + G A S C+ F S + S +L C Sbjct: 511 FGTRKGLASGLGFGF-FYIIMFGSYALAFCCFSHCKFFLSPSVYKIDKVANSDNCKILKC 569 Query: 476 GTSPG*CWQRRLKNSKINRTIVLR--FSLCLGCPARGR 369 T+P W+ RL K R I+ F++ +G G+ Sbjct: 570 STNPPILWKSRLSRQKKTRRIIAHVFFAVMIGATQLGQ 607 >SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1669 Score = 27.9 bits (59), Expect = 8.3 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = -2 Query: 643 IKLVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLS-ALSPSRWAIL 506 +++++LP CF+ V +LLS R+L+L C S ++ LSPSR +L Sbjct: 955 LRVLVLP-CFSVVVAFLLSPLRVLVLS--CFSVVVAFLLSPSRVLVL 998 >SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) Length = 2049 Score = 27.9 bits (59), Expect = 8.3 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +1 Query: 529 KEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAFEISEGST 681 K++KD R SPG +KK K ST ++ P PK+ S+ ST Sbjct: 302 KKRKDSQESRKSPGKGRSSSESDKKHK-GSTGDKTPNKTPKSP-RASKSST 350 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,184,239 Number of Sequences: 59808 Number of extensions: 466828 Number of successful extensions: 1317 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1316 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1817559367 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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