Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0918
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 29   4.8  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   8.3  

>SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -3

Query: 354 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIP 181
           PR D   T+  R    ++  P +P++  PC  A     L K+      LSVGL +PIP
Sbjct: 30  PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = -2

Query: 643 IKLVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLS-ALSPSRWAIL 506
           +++++LP CF+  V +LLS  R+L+L  PC S  ++  LSP R  +L
Sbjct: 210 LRVIVLP-CFSVVVAFLLSPLRVLVL--PCFSVVVAFLLSPLRVLVL 253


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = -1

Query: 650 FGHKIGSSSDVLCVFRFLFTLKGQAAAPGLSLSECRSFCSFPLSLGHTF--SKRAHLLHC 477
           FG + G +S +   F F   + G  A      S C+ F S  +        S    +L C
Sbjct: 511 FGTRKGLASGLGFGF-FYIIMFGSYALAFCCFSHCKFFLSPSVYKIDKVANSDNCKILKC 569

Query: 476 GTSPG*CWQRRLKNSKINRTIVLR--FSLCLGCPARGR 369
            T+P   W+ RL   K  R I+    F++ +G    G+
Sbjct: 570 STNPPILWKSRLSRQKKTRRIIAHVFFAVMIGATQLGQ 607


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = -2

Query: 643  IKLVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLS-ALSPSRWAIL 506
            +++++LP CF+  V +LLS  R+L+L   C S  ++  LSPSR  +L
Sbjct: 955  LRVLVLP-CFSVVVAFLLSPLRVLVLS--CFSVVVAFLLSPSRVLVL 998


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 529 KEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAFEISEGST 681
           K++KD    R SPG        +KK K  ST ++ P   PK+    S+ ST
Sbjct: 302 KKRKDSQESRKSPGKGRSSSESDKKHK-GSTGDKTPNKTPKSP-RASKSST 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,184,239
Number of Sequences: 59808
Number of extensions: 466828
Number of successful extensions: 1317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)