Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0918
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72066-1|AAC14371.1|  897|Homo sapiens CtBP interacting protein ...    30   6.9  
BC030590-1|AAH30590.1|  902|Homo sapiens RBBP8 protein protein.        30   6.9  
AF043431-1|AAC34368.1|  897|Homo sapiens retinoblastoma-interact...    30   6.9  

>U72066-1|AAC14371.1|  897|Homo sapiens CtBP interacting protein
           CtIP protein.
          Length = 897

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 502 EKVWPNERGKEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAFE 663
           E +    R +  KD ++D+      +   R +K++KT+  SE E + CP+ +F+
Sbjct: 414 ESLGEQNRTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHE-VSCPQASFD 466


>BC030590-1|AAH30590.1|  902|Homo sapiens RBBP8 protein protein.
          Length = 902

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 502 EKVWPNERGKEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAFE 663
           E +    R +  KD ++D+      +   R +K++KT+  SE E + CP+ +F+
Sbjct: 414 ESLGEQNRTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHE-VSCPQASFD 466


>AF043431-1|AAC34368.1|  897|Homo sapiens retinoblastoma-interacting
           protein protein.
          Length = 897

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 502 EKVWPNERGKEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAFE 663
           E +    R +  KD ++D+      +   R +K++KT+  SE E + CP+ +F+
Sbjct: 414 ESLGEQNRTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHE-VSCPQASFD 466


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,561,426
Number of Sequences: 237096
Number of extensions: 2271936
Number of successful extensions: 5036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5026
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)