Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0918
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    27   9.7  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
 Frame = -3

Query: 597 IYSQRTGCCSWAIPVRVPIFLLFPPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSD 418
           ++    G C   +   V  F+L+PP++   F      +P    SGL +    ++ +   D
Sbjct: 284 LFKSSDGLCFVGVSTYV-YFVLYPPIIYFTFLRKKLKTPPNNTSGLFMYRKHKDEQGSGD 342

Query: 417 DRSSIF-TVSWLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCI 262
              S +   S L S    D     RD   T      +   QNPH      P I
Sbjct: 343 LPDSYYPRFSGLTSPSYDDLFDYDRDARFTHYDISRNEYVQNPHYNTYSTPLI 395


>Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
 Frame = -3

Query: 597 IYSQRTGCCSWAIPVRVPIFLLFPPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSD 418
           ++    G C   +   V  F+L+PP++   F      +P    SGL +    ++ +   D
Sbjct: 284 LFKSSDGLCFVGVSTYV-YFVLYPPIIYFTFLRKKLKTPPNNTSGLFMYRKHKDEQGSGD 342

Query: 417 DRSSIF-TVSWLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCI 262
              S +   S L S    D     RD   T      +   QNPH      P I
Sbjct: 343 LPDSYYPRFSGLTSPSYDDLFDYDRDARFTHYDISRNEYVQNPHYNTYSTPLI 395


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 485 EGEPVSKKYGPTRGGKSRKIGTLTGIAQEQQ 577
           +G+P S +Y P++ G++ KIG L  + +E +
Sbjct: 299 KGKPKSAEYFPSQIGQTTKIGRLCTVTKESR 329


>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -2

Query: 679 YFLLKFRKPFSDIKLVLLPMCFAFFVFYLLSKDRLLL 569
           +F   + +  + + +++LPM + FF F LL ++++L+
Sbjct: 239 FFYTTWLQMLTHLAVIILPMGYTFFSFLLLYRNQVLV 275


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 523 RGKEQKDRHSDRDSPGAAACPLRVNKKRKTQSTSEEE 633
           RG   + R S     GA   P +  +K+K +S SE+E
Sbjct: 73  RGGRGRPRGSKNSDGGAGGPPAKRGRKKKAKSESEDE 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,284
Number of Sequences: 27780
Number of extensions: 354920
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)