Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0918
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10670.1 68417.m01743 transcription elongation factor-related...    33   0.24 
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.55 
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to...    30   1.7  
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to...    30   1.7  
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai...    29   2.9  
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam...    29   2.9  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    29   3.9  
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea...    29   3.9  
At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein, pu...    28   5.1  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    27   9.0  

>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 408 KNDRPIYLRILQTTLPTSARTRTAMEKVSPFRKSMAQREGERAERSAL 551
           KN   IYL+ +      S  +   +++V   R+ +  RE ERAER++L
Sbjct: 55  KNKDAIYLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSL 102


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 408 KNDRPIYLRILQTTLPTSARTRTAMEKVSPFRKSMAQREGERAERSAL 551
           KN   IYL+ +      S  +    +++   R+ +  RE ERAER+ L
Sbjct: 615 KNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESERAERATL 662


>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 544 RHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPK 651
           R +  D+P ++  P RV ++R  + T +  P LCPK
Sbjct: 509 RANKLDNPKSSELPDRVCRRRPKERTMQLHPYLCPK 544


>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 544 RHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPK 651
           R +  D+P ++  P RV ++R  + T +  P LCPK
Sbjct: 509 RANKLDNPKSSELPDRVCRRRPKERTMQLHPYLCPK 544


>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 410

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 692 DWCTVLPSEISKAVFGHKIGSSS 624
           D C  L SE+ KAV GH+ GS+S
Sbjct: 358 DECVTLQSELLKAVAGHEEGSNS 380


>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 233

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 634 VLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLS 536
           VLL   F F+VF ++ K+ L L G+P +S +++
Sbjct: 17  VLLRFDFNFWVFVVIEKENLCLYGHPNESWEVN 49


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 390 WLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNL 277
           WL  +R K+SLL +RD      R  P    QN H P++
Sbjct: 259 WLQVARAKNSLLVQRDNAELRYRYHPFRGHQNIHHPSM 296


>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           (GP:1737218) [Arabidopsis thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 515 GHTFSKRAHLLHCGTSPG*CWQ 450
           G+T  K +  LHCG + G CW+
Sbjct: 456 GYTHCKASGALHCGINNGGCWR 477


>At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein,
           putative similar to mdr-like P-glycoprotein GI:3849833
           from [Arabidopsis thaliana]
          Length = 1247

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 590 LKGQAAAPGLSLSECRSFCSFPLSL 516
           L+G  +  G  LS+C +FCS+ L L
Sbjct: 904 LRGHISGFGYGLSQCLAFCSYALGL 928


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 540 FLLFPPLVGPYFFETGSPSPLRYES 466
           ++  PPL  PY +++  PSP  Y S
Sbjct: 40  YVYSPPLPSPYVYKSPPPSPYLYSS 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,825
Number of Sequences: 28952
Number of extensions: 326508
Number of successful extensions: 924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)