Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0917
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    30   1.6  
At3g47290.1 68416.m05139 phosphoinositide-specific phospholipase...    29   3.7  
At4g31640.1 68417.m04494 transcriptional factor B3 family protei...    28   4.9  
At3g57520.3 68416.m06405 alkaline alpha galactosidase, putative ...    28   6.5  
At3g57520.2 68416.m06404 alkaline alpha galactosidase, putative ...    28   6.5  
At3g57520.1 68416.m06403 alkaline alpha galactosidase, putative ...    28   6.5  

>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 245 QPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVL 358
           +PLG+       G++ V  I  GS A K  ++ VGD L
Sbjct: 83  KPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTL 120


>At3g47290.1 68416.m05139 phosphoinositide-specific phospholipase C
           family protein similar to phosphoinositide-specific
           phospholipase C [Nicotiana rustica] GI:1771381,
           1-phosphatidylinositol-4,5-bisphosphate
           phosphodiesterase [Nicotiana rustica] GI:2765140;
           contains Pfam profiles PF00168: C2 domain, PF00388:
           Phosphatidylinositol-specific phospholipase C, X domain
          Length = 531

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 17  EQAELAIIVSRAHFKALIEAHDQIGKIWLERGSGIDDKLIPNEFPDLIEFSKESPEG 187
           +Q    I++SR   K L+ A+D  GK+ +  G  I        +  L+ F    P G
Sbjct: 236 QQLRNKILISRRPPKELLYANDDDGKVGVRNGVEIRQHPADPNYQSLVSFHVVEPRG 292


>At4g31640.1 68417.m04494 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 [Brassica
           oleracea var. botrytis] GI:3170424; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 352

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +2

Query: 377 HIESEEQLKEAVAKPNDRVTLKVGPNLKEKSSQLTNKLTCYVRTLFDYNPTQDTL-IP-- 547
           H  +EE  +   +  N+++   +  N+K +  Q +  LTC+ +++   N T+D + IP  
Sbjct: 115 HDRNEESDEIGESSRNEKI---IEENVKTEPDQFSPDLTCFSQSVTASNLTRDLVGIPRD 171

Query: 548 -CKEIGLTFKKGDILQISDRKDPNWWQA 628
             K  GL   + +I+ + +  + N W++
Sbjct: 172 FAKRYGLNIGRHEIVLMDE--EGNTWES 197


>At3g57520.3 68416.m06405 alkaline alpha galactosidase, putative
           similar to alkaline alpha galactosidase II [Cucumis
           melo] GI:29838631; contains Pfam profile PF05691:
           Raffinose synthase or seed imbibition protein Sip1
          Length = 565

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 98  WLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDMPIETVKVVGLRKVPGQ 247
           W+ +  G   K IP E   ++  SK+  EGNGD    TV  V L  + GQ
Sbjct: 78  WMTQRMGSCGKDIPLETQFMLLESKDEVEGNGD-DAPTVYTVFLPLLEGQ 126


>At3g57520.2 68416.m06404 alkaline alpha galactosidase, putative
           similar to alkaline alpha galactosidase II [Cucumis
           melo] GI:29838631; contains Pfam profile PF05691:
           Raffinose synthase or seed imbibition protein Sip1
          Length = 656

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 98  WLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDMPIETVKVVGLRKVPGQ 247
           W+ +  G   K IP E   ++  SK+  EGNGD    TV  V L  + GQ
Sbjct: 78  WMTQRMGSCGKDIPLETQFMLLESKDEVEGNGD-DAPTVYTVFLPLLEGQ 126


>At3g57520.1 68416.m06403 alkaline alpha galactosidase, putative
           similar to alkaline alpha galactosidase II [Cucumis
           melo] GI:29838631; contains Pfam profile PF05691:
           Raffinose synthase or seed imbibition protein Sip1
          Length = 773

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 98  WLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDMPIETVKVVGLRKVPGQ 247
           W+ +  G   K IP E   ++  SK+  EGNGD    TV  V L  + GQ
Sbjct: 78  WMTQRMGSCGKDIPLETQFMLLESKDEVEGNGD-DAPTVYTVFLPLLEGQ 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,347
Number of Sequences: 28952
Number of extensions: 281145
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)