Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0916
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EAR4 Cluster: GAF domain containing protein; n=1; Tri...    34   3.5  

>UniRef50_A2EAR4 Cluster: GAF domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: GAF domain containing
            protein - Trichomonas vaginalis G3
          Length = 1209

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +2

Query: 473  YIFMNNDLVS-WSLP-DVLIVLVVAYARSYQNSSFHNYHKTILRLAIVFYHQMVARIFIN 646
            +IF    L+S +++P  V +    + A +YQ   FH++   +      F+  M+ +++I 
Sbjct: 939  HIFTEMGLLSTFTIPIGVALRFFSSIADNYQQLPFHDFANAVSTTQFAFWLMMLNKLYIQ 998

Query: 647  FTQLKALNF 673
            FT+++ L+F
Sbjct: 999  FTKIELLSF 1007


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,858,713
Number of Sequences: 1657284
Number of extensions: 14257504
Number of successful extensions: 30530
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30528
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)