Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0916
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   2.3  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   4.0  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    26   7.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.2  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   9.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.2  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 337 YFV*WNIITFNVITQQYFRMII*I*VFFS 423
           YF  W  ITF  IT  +  MII I + FS
Sbjct: 193 YFTAWRQITFTWITLMFISMIIPIGISFS 221


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = -1

Query: 326 VGVLTPTTSLYRAAHFPLSFHFRVSDGLSRDPIRRTGSYRRGHDPKRPTFIIQFRILTIL 147
           VG++    +++++   PL   F+  DG S+ PI     ++ G D ++   +IQ  ILT++
Sbjct: 512 VGIIPDACTVFKSTMQPLRLLFKCQDG-SKYPI----IFKNGDDLRQDQLVIQ--ILTLM 564

Query: 146 H*TIK 132
              +K
Sbjct: 565 DKLLK 569


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 539 QRPTRLRHLATTTKPNHY 486
           +RPTR+ H   T KPN Y
Sbjct: 412 KRPTRVLHCEKTCKPNPY 429


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 236  DPIRRTGSYRRGHDPKRPTFIIQFRIL 156
            D +RR   Y  G++P  PT ++ + +L
Sbjct: 920  DDLRRHTVYAGGYEPNSPTIVLFWEVL 946


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 488 NDLVSWSLPDVLIVLVVAYARS----YQNSSF 571
           ++L SW+L +VLI+ +V Y  S     Q SSF
Sbjct: 24  DELYSWTLKNVLILFLVQYRASTPSALQTSSF 55


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 473  YIFMNNDLVSWSLPDVLIVLVVAYARSYQNSSFHNYHKTI 592
            YI  NN  +  S  D LI+L     + YQ    H YH  I
Sbjct: 1280 YIESNNSAMHIS--DCLILLHEFLVQGYQGVDMHTYHNII 1317


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 250 TDCRAILYDELAATGADTTRNDRPSLF 170
           +D  AILYD++  +GA+     +PS F
Sbjct: 415 SDQLAILYDKVKTSGAELPSAPKPSTF 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,611
Number of Sequences: 5004
Number of extensions: 63913
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)