Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0916
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    32   0.59 
01_03_0023 + 11731990-11732185,11732672-11733363                       28   7.2  
09_01_0168 + 2448444-2448818,2448919-2449408,2450664-2450857           28   9.6  

>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 521 LIVLVVAYARSYQNSSFHNYHKTILRLAIVFYHQMVARIFINFTQLKALNFR 676
           L+V  +A A SYQ+ S    HK + +   + Y++ + + F+ + +L   +F+
Sbjct: 153 LLVDSLATAESYQSCSLKVNHKRVAKAYFIGYNRSLCKYFVCYERLNRFSFK 204


>01_03_0023 + 11731990-11732185,11732672-11733363
          Length = 295

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = -2

Query: 277 PYLSISVFPTDCRAILYDELAATGADTTRNDRPSLFNFEF*LFCIELLKVALRSFLRQIG 98
           P+LS   FP            ++ A T R  RP+ FN     FC  LL VA   ++ +I 
Sbjct: 17  PFLSYHAFPVS-------GWPSSTAGTVREIRPAPFNS----FCFRLLVVASLGWVSRIY 65

Query: 97  RTAGNSCLA 71
              GN+ LA
Sbjct: 66  AVVGNNFLA 74


>09_01_0168 + 2448444-2448818,2448919-2449408,2450664-2450857
          Length = 352

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 193 GSCPRR*LPVRRIGSRDNPSE 255
           G  P   LP  RIG+RDNP E
Sbjct: 217 GLTPMGCLPAERIGNRDNPGE 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,817,227
Number of Sequences: 37544
Number of extensions: 368797
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)