Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0916
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.60 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 396 HPKILLRYDIK--SNDIPLYKVIDRSWCAHPDYLSLPSCSFSLIFPFP 259
           H  +L RY ++  SND+P  +  D     +P Y   P+ ++S   PFP
Sbjct: 263 HKLLLNRYYLERLSNDLPYLEEFDWQKPFYPGY--YPTMTYSNGLPFP 308


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 193  RNDRPSLFNFEF*LFCIELLKVALRSFLRQIGRTAGN 83
            R+DRP L   E  +  ++ LK+ LRS L     T  N
Sbjct: 1878 RSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQNN 1914


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 193  RNDRPSLFNFEF*LFCIELLKVALRSFLRQIGRTAGN 83
            R+DRP L   E  +  ++ LK+ LRS L     T  N
Sbjct: 1874 RSDRPELSEAECDIDSLKKLKLGLRSSLWSRPSTQNN 1910


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 276 GKMSSSVERGSRGEHTNSD 332
           GK +  V RG+RGEHT ++
Sbjct: 301 GKFNLQV-RGTRGEHTEAE 318


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 336 LLCIVEYHYF*CHNATVXXXXXXXXXXXXALIIIAVMLLSVL 461
           +LC+ + H+   HN+T             AL + A++L ++L
Sbjct: 295 ILCMSDLHWQLPHNSTNPPNILLYYRDSLALSVFALILTALL 336


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 306 YLSLPSCSFSL-IFPFPCFRRIVARSYTTNWQLPARTRPETTDLHYSISNFN 154
           Y+SL +    +     PC   +  ++++  W L    R  T +  +S  + N
Sbjct: 26  YVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCN 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,600
Number of Sequences: 438
Number of extensions: 4741
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)