Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0915
         (655 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.5  
UniRef50_A0FRP2 Cluster: Phage portal protein, HK97 family; n=1;...    33   7.9  
UniRef50_P91305 Cluster: Putative uncharacterized protein; n=2; ...    33   7.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 145 WYLPVRTHKRSYHQ 186
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A0FRP2 Cluster: Phage portal protein, HK97 family; n=1;
           Burkholderia phymatum STM815|Rep: Phage portal protein,
           HK97 family - Burkholderia phymatum STM815
          Length = 524

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 188 YWW*DLL*VRTGRYHNPAYFCREAVMHFALKGGADVRLIS 69
           +W   LL VR   + NP  F    +MH AL+G A   +IS
Sbjct: 78  HWLYRLLAVRPNEFQNPMEFREMMMMHLALRGNAFAEIIS 117


>UniRef50_P91305 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 361

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 83  RLPHPSKRNALLLHGRNRQGCGTYP-----CGLTRGPTTSK 190
           RLP P K+N +L+   N Q C T P      G+T  P+T+K
Sbjct: 30  RLPFPDKQNMMLVSWENSQICSTLPNKLHELGITELPSTAK 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,509,489
Number of Sequences: 1657284
Number of extensions: 11928291
Number of successful extensions: 20475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20473
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)