Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0915
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.64 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 51  VLRYLRRYKSNVCPTLQSEMHYCFTAEIGRVVVPTRADSQEVLPPVKNEDDVT 209
           +LRYL+    +    + S       ++IG+V + T  DS+       NEDD T
Sbjct: 326 ILRYLQELHVDAPTWISSVTESVLKSKIGQVFLITILDSKVSARIEMNEDDNT 378


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 419 TSF-LALLYQPDVNYQHFGCSHLK*FPNLF 505
           T+F +A+LY+PD  Y  F   + + +PN F
Sbjct: 142 TAFSIAVLYRPDTKYMKFPAIY-EIYPNYF 170


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 419 TSF-LALLYQPDVNYQHFGCSHLK*FPNLF 505
           T+F +A+LY+PD  Y  F   + + +PN F
Sbjct: 142 TAFSIAVLYRPDTKYMKFPAIY-EIYPNYF 170


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  NHLEI*VLRYLRRYKSNVCPTLQSEMH 113
           N + +    Y+   KSN+  TLQ ++H
Sbjct: 37  NPINVYTKAYIYTIKSNMAKTLQFDVH 63


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 98  SKRNALLLHGRNRQGCGTYPCGLTRGPTTSKK 193
           +K NA+LL GR+++       G   GPT ++K
Sbjct: 366 TKENAMLLSGRSQKS----TTGPPPGPTPAQK 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +1

Query: 85   SAPPFKAKCITASRQK*AGLWYLPVRTHKRSYHQ 186
            S PP   +C   + Q     W  P  TH     Q
Sbjct: 1112 SIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1145


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +1

Query: 85   SAPPFKAKCITASRQK*AGLWYLPVRTHKRSYHQ 186
            S PP   +C   + Q     W  P  TH     Q
Sbjct: 1108 SIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,989
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)