Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0913
         (529 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22X13 Cluster: Putative uncharacterized protein; n=1; ...    32   7.1  
UniRef50_UPI00006CD145 Cluster: hypothetical protein TTHERM_0012...    32   9.4  

>UniRef50_Q22X13 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 316

 Score = 32.3 bits (70), Expect = 7.1
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -2

Query: 498 N*LYSNMLRSKILVPTY-----FIYITLCLYSV*NYSSR*NESILIEFNSDLRF 352
           N  YS++ R+K+L+P Y     F   TL + S  ++ S  N+S++I    D+RF
Sbjct: 258 NPFYSHIFRNKVLIPMYNRDALFNLFTLVIASTHSHISSINQSLIIINLKDIRF 311


>UniRef50_UPI00006CD145 Cluster: hypothetical protein
           TTHERM_00127160; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00127160 - Tetrahymena
           thermophila SB210
          Length = 162

 Score = 31.9 bits (69), Expect = 9.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 50  RVQCTQLVTNMKEICVCDLLGTEFPKGRLSQASLSVCLNYLFTYIICNIYM 202
           +V  T+L+  +KE+ VC     +     +   S  +  NYL+ +I+ NIYM
Sbjct: 49  KVLATKLIKCLKELAVCSKSALKENLENIGSISADI-KNYLYEHILSNIYM 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,908,547
Number of Sequences: 1657284
Number of extensions: 7853194
Number of successful extensions: 15434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15420
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)