Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0913
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    28   0.99 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.3  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   7.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.2  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 71  VTNMKEIC-VCDLLGTEFPKGRLSQASLSVCLNYLFT 178
           +TN++  C +   L  +FP   L+QAS+    N +F+
Sbjct: 623 LTNLQSFCTISSFLSNDFPLSLLTQASMKATKNAVFS 659


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 155 VCLNYLFTYIICNIYMLLIHGI*YVFCILYVVNC 256
           VC+ Y++   +CN Y+  +       C LY++ C
Sbjct: 40  VCIFYVYKIALCNEYIRFL-----AKCFLYILRC 68


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 449 YVGTSILLLNMLLYN*FKCVPNIIRHP 529
           ++G ++LLLNM L + F C+ N++  P
Sbjct: 318 FIG-ALLLLNMNLTSAFNCLANLLDKP 343


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 393 NESILIEFNSDLRFLPKNQPLIL 325
           N++IL EF+  +RF   N+ L+L
Sbjct: 796 NDAILTEFSKSIRFRNVNKDLLL 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,440
Number of Sequences: 5004
Number of extensions: 38411
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)