Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0913
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0390 - 28938485-28938751,28939924-28941282                       28   5.3  
10_08_0930 - 21641818-21642240,21642731-21642820,21642902-216429...    27   7.1  
03_02_0179 - 6201393-6202365,6202470-6202610,6202728-6202767,620...    27   7.1  
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282...    27   9.3  

>01_06_0390 - 28938485-28938751,28939924-28941282
          Length = 541

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 132 LPLGNSVPNRSHTHISFIFVTSC-VHCTRG 46
           LPLG+  P+ SHT  +++   SC VH + G
Sbjct: 479 LPLGSPQPDYSHTCDTYVSYPSCVVHASMG 508


>10_08_0930 -
           21641818-21642240,21642731-21642820,21642902-21642984,
           21643512-21643605,21644366-21644488,21644893-21645168
          Length = 362

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 6   EPHVTVLPRSVNIYHVYSVRSLLRI*KKYVYAICWELNFPREDFLKHHFLSA*ITYLH 179
           E +  ++PR   +Y  + + +L+   + Y+YA  +E      DF+  + L   +TY+H
Sbjct: 121 ESYERLVPRC--LYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGKLTYVH 176


>03_02_0179 -
           6201393-6202365,6202470-6202610,6202728-6202767,
           6204390-6204791,6205567-6205696
          Length = 561

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 119 FP-KGRLSQASLSVCLNYLFTYIICNIYMLLI 211
           FP + R +  S++VC+N LFT++I   ++ ++
Sbjct: 458 FPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 489


>03_01_0363 +
           2827990-2828055,2828215-2829306,2829715-2829837,
           2829994-2830110,2830248-2830429,2830558-2830744,
           2830846-2831055,2831177-2831305,2832179-2832247,
           2832751-2832873,2832957-2833007,2833101-2833250
          Length = 832

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +2

Query: 83  KEICVCDLLGTEFPKGRLSQASLSVCLNYLFTYI-----ICNIYMLLIHG 217
           K+IC         PKG L+  SLS+  N L TY      + N+Y + +HG
Sbjct: 211 KKICSVAFSPNNPPKGCLATLSLSLNNNMLETYSVDNENVSNMYSIEMHG 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,944
Number of Sequences: 37544
Number of extensions: 187227
Number of successful extensions: 279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)