Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0913
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61900.2 68414.m06984 expressed protein contains similarity t...    29   2.6  
At1g61900.1 68414.m06983 expressed protein contains similarity t...    29   2.6  
At5g58020.1 68418.m07260 expressed protein contains PF04641: Pro...    28   4.5  
At5g26340.1 68418.m03148 hexose transporter, putative strong sim...    28   4.5  
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    27   7.8  

>At1g61900.2 68414.m06984 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 413

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 20  CIAKVGKYLPRVQCTQLVTNMKEICVCDLLGTEFPKGRLSQASLSVC 160
           C   +  Y+  +Q   L+TN++ +     LGT+  K  +++   SVC
Sbjct: 286 CCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNITKNIFSVC 332


>At1g61900.1 68414.m06983 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 433

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 20  CIAKVGKYLPRVQCTQLVTNMKEICVCDLLGTEFPKGRLSQASLSVC 160
           C   +  Y+  +Q   L+TN++ +     LGT+  K  +++   SVC
Sbjct: 286 CCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNITKNIFSVC 332


>At5g58020.1 68418.m07260 expressed protein contains PF04641:
           Protein of unknown function, DUF602
          Length = 354

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +2

Query: 80  MKEICVCDLLGTEFPKGRLSQASLSVCLNYLFTYI 184
           + E CV DLLG  F K  L  A LS  L   F+YI
Sbjct: 131 LAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYI 165


>At5g26340.1 68418.m03148 hexose transporter, putative strong
           similarity to hexose transporter, Lycopersicon
           esculentum, GI:5734440; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 526

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 119 FP-KGRLSQASLSVCLNYLFTYIICNIYMLLI 211
           FP + R +  S++VC+N LFT+II   ++ ++
Sbjct: 416 FPLETRSAGQSVTVCVNLLFTFIIAQAFLSML 447


>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 257 YNLQHIIYKKHIKYHE*VTCKYYR*YM 177
           + L +I YK ++  HE V+ KYYR ++
Sbjct: 493 FGLYYIDYKNNLTRHEKVSGKYYREFL 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,794,538
Number of Sequences: 28952
Number of extensions: 173748
Number of successful extensions: 324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)