BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0913 (529 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g61900.2 68414.m06984 expressed protein contains similarity t... 29 2.6 At1g61900.1 68414.m06983 expressed protein contains similarity t... 29 2.6 At5g58020.1 68418.m07260 expressed protein contains PF04641: Pro... 28 4.5 At5g26340.1 68418.m03148 hexose transporter, putative strong sim... 28 4.5 At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con... 27 7.8 >At1g61900.2 68414.m06984 expressed protein contains similarity to glutamic acid/alanine-rich protein GI:6707830 from [Trypanosoma congolense] Length = 413 Score = 28.7 bits (61), Expect = 2.6 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +2 Query: 20 CIAKVGKYLPRVQCTQLVTNMKEICVCDLLGTEFPKGRLSQASLSVC 160 C + Y+ +Q L+TN++ + LGT+ K +++ SVC Sbjct: 286 CCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNITKNIFSVC 332 >At1g61900.1 68414.m06983 expressed protein contains similarity to glutamic acid/alanine-rich protein GI:6707830 from [Trypanosoma congolense] Length = 433 Score = 28.7 bits (61), Expect = 2.6 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +2 Query: 20 CIAKVGKYLPRVQCTQLVTNMKEICVCDLLGTEFPKGRLSQASLSVC 160 C + Y+ +Q L+TN++ + LGT+ K +++ SVC Sbjct: 286 CCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNITKNIFSVC 332 >At5g58020.1 68418.m07260 expressed protein contains PF04641: Protein of unknown function, DUF602 Length = 354 Score = 27.9 bits (59), Expect = 4.5 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = +2 Query: 80 MKEICVCDLLGTEFPKGRLSQASLSVCLNYLFTYI 184 + E CV DLLG F K L A LS L F+YI Sbjct: 131 LAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYI 165 >At5g26340.1 68418.m03148 hexose transporter, putative strong similarity to hexose transporter, Lycopersicon esculentum, GI:5734440; contains Pfam profile PF00083: major facilitator superfamily protein Length = 526 Score = 27.9 bits (59), Expect = 4.5 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +2 Query: 119 FP-KGRLSQASLSVCLNYLFTYIICNIYMLLI 211 FP + R + S++VC+N LFT+II ++ ++ Sbjct: 416 FPLETRSAGQSVTVCVNLLFTFIIAQAFLSML 447 >At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis thaliana] Length = 533 Score = 27.1 bits (57), Expect = 7.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 257 YNLQHIIYKKHIKYHE*VTCKYYR*YM 177 + L +I YK ++ HE V+ KYYR ++ Sbjct: 493 FGLYYIDYKNNLTRHEKVSGKYYREFL 519 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,794,538 Number of Sequences: 28952 Number of extensions: 173748 Number of successful extensions: 324 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 324 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 977150592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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