BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0912 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 338 3e-93 SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 30 1.6 SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_11242| Best HMM Match : MAM (HMM E-Value=0) 28 6.3 SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 6.3 SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 687 Score = 338 bits (830), Expect = 3e-93 Identities = 151/211 (71%), Positives = 181/211 (85%) Frame = -3 Query: 698 RNRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519 RNRLKYAL EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGR Sbjct: 473 RNRLKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGR 532 Query: 518 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 339 F +HRIT EEAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K Sbjct: 533 FAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGK 592 Query: 338 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 159 ++D+IKF++GN+ M+ GGRN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+I Sbjct: 593 VIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVI 652 Query: 158 GKGTKAYISLPRGKGIRLTIAEERDKRIAAK 66 GKG K Y+SLP+GKG+RL+IAEERD+RIA K Sbjct: 653 GKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 683 >SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) Length = 482 Score = 30.3 bits (65), Expect = 1.6 Identities = 17/72 (23%), Positives = 35/72 (48%) Frame = -3 Query: 512 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 333 I +TP+ K C+V R++TGP +++ +G + +++ ++ + + + Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345 Query: 332 DFIKFESGNLCM 297 F FE G CM Sbjct: 346 -FPDFEKGVACM 356 >SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 259 Score = 29.5 bits (63), Expect = 2.7 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Frame = -2 Query: 345 YEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVE-QR 169 Y G+HQV + + G P G H+V E + T H+V +R Sbjct: 148 YTTRGVHQVHI-----ERGSPKYTTRGGHQVHNERGSPSTQREGVTKYTTRGGHQVHNER 202 Query: 168 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 73 EGV +R GH H RG+ HR Sbjct: 203 GSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234 >SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 228 Score = 28.7 bits (61), Expect = 4.8 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 177 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 85 +Q H+ G+ H GH HHRR +G Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71 >SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 592 Score = 28.7 bits (61), Expect = 4.8 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 176 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 63 N + I G T + LPR +G+ TIA+E D+R A + Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409 >SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1252 Score = 28.7 bits (61), Expect = 4.8 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 176 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 63 N + I G T + LPR +G+ TIA+E D+R A + Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545 >SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 122 Score = 28.7 bits (61), Expect = 4.8 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Frame = -2 Query: 270 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 97 C H H + + + H +H LH TH+ E + R G G R PH+R Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74 >SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1776 Score = 28.3 bits (60), Expect = 6.3 Identities = 11/56 (19%), Positives = 28/56 (50%) Frame = -3 Query: 686 KYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519 +Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + R Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651 >SB_11242| Best HMM Match : MAM (HMM E-Value=0) Length = 348 Score = 28.3 bits (60), Expect = 6.3 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = -2 Query: 690 SEVCFDRKRSPENCE 646 +E+C DRKR P++CE Sbjct: 81 NELCHDRKRGPDDCE 95 >SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 249 Score = 28.3 bits (60), Expect = 6.3 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +1 Query: 76 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRD 255 + LSR + R+P P ++ +P P T + + +CPV + TMS P + R Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYR- 101 Query: 256 TMVPTRPKLRPPV-IIHKFPDSNLMKSIIFVV 348 P L P + + P S + ++ F++ Sbjct: 102 VHYPLSRVLYPVYRVFYHLPVSFIPYTVSFII 133 >SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) Length = 237 Score = 28.3 bits (60), Expect = 6.3 Identities = 18/57 (31%), Positives = 23/57 (40%) Frame = -2 Query: 264 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 94 HH P +LRH H+ + H RH H+R H H H P+H R Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226 >SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 359 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -2 Query: 198 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 70 THL E + + R+ G +AAA + P + R G +RS Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273 >SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4700 Score = 27.9 bits (59), Expect = 8.4 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Frame = -3 Query: 494 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 324 E+A +C++ R+ P+ LV G +++ I + Q+ + + + Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030 Query: 323 KFESGNLCMITGGRNLGRV 267 K + NLC G +N+G V Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,370,934 Number of Sequences: 59808 Number of extensions: 520684 Number of successful extensions: 1704 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1692 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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