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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0912
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             338   3e-93
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.6  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.8  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         28   6.3  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   6.3  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  338 bits (830), Expect = 3e-93
 Identities = 151/211 (71%), Positives = 181/211 (85%)
 Frame = -3

Query: 698  RNRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
            RNRLKYAL   EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGR
Sbjct: 473  RNRLKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGR 532

Query: 518  FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 339
            F +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K
Sbjct: 533  FAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGK 592

Query: 338  IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 159
            ++D+IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+I
Sbjct: 593  VIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVI 652

Query: 158  GKGTKAYISLPRGKGIRLTIAEERDKRIAAK 66
            GKG K Y+SLP+GKG+RL+IAEERD+RIA K
Sbjct: 653  GKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 683


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = -3

Query: 512 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 333
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 332 DFIKFESGNLCM 297
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = -2

Query: 345 YEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVE-QR 169
           Y   G+HQV +     + G P     G H+V  E             + T   H+V  +R
Sbjct: 148 YTTRGVHQVHI-----ERGSPKYTTRGGHQVHNERGSPSTQREGVTKYTTRGGHQVHNER 202

Query: 168 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 73
                  EGV    +R GH  H  RG+   HR
Sbjct: 203 GSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 177 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 85
           +Q  H+  G+   H      GH  HHRR +G
Sbjct: 41  DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 176 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 63
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 176 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 63
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -2

Query: 270 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 97
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R    PH+R
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = -3

Query: 686 KYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 690 SEVCFDRKRSPENCE 646
           +E+C DRKR P++CE
Sbjct: 81  NELCHDRKRGPDDCE 95


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +1

Query: 76  MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRD 255
           + LSR    + R+P P     ++ +P P   T + +   +CPV  +  TMS  P  + R 
Sbjct: 48  LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYR- 101

Query: 256 TMVPTRPKLRPPV-IIHKFPDSNLMKSIIFVV 348
              P    L P   + +  P S +  ++ F++
Sbjct: 102 VHYPLSRVLYPVYRVFYHLPVSFIPYTVSFII 133


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -2

Query: 264 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 94
           HH  P     +LRH  H+  +  H RH      H+R  H   H       H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 198 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 70
           THL  E  + +  R+   G  +AAA +   P + R  G  +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -3

Query: 494  EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 324
            E+A   +C++ R+   P+    LV   G   +++      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 323  KFESGNLCMITGGRNLGRV 267
            K +  NLC   G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,370,934
Number of Sequences: 59808
Number of extensions: 520684
Number of successful extensions: 1704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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