Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0912
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 338 3e-93
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 30 1.6
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 28 6.3
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 6.3
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 338 bits (830), Expect = 3e-93
Identities = 151/211 (71%), Positives = 181/211 (85%)
Frame = -3
Query: 698 RNRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
RNRLKYAL EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGR
Sbjct: 473 RNRLKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGR 532
Query: 518 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 339
F +HRIT EEAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K
Sbjct: 533 FAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGK 592
Query: 338 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 159
++D+IKF++GN+ M+ GGRN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+I
Sbjct: 593 VIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVI 652
Query: 158 GKGTKAYISLPRGKGIRLTIAEERDKRIAAK 66
GKG K Y+SLP+GKG+RL+IAEERD+RIA K
Sbjct: 653 GKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 683
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = -3
Query: 512 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 333
I +TP+ K C+V R++TGP +++ +G + +++ ++ + + +
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345
Query: 332 DFIKFESGNLCM 297
F FE G CM
Sbjct: 346 -FPDFEKGVACM 356
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Frame = -2
Query: 345 YEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVE-QR 169
Y G+HQV + + G P G H+V E + T H+V +R
Sbjct: 148 YTTRGVHQVHI-----ERGSPKYTTRGGHQVHNERGSPSTQREGVTKYTTRGGHQVHNER 202
Query: 168 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 73
EGV +R GH H RG+ HR
Sbjct: 203 GSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 177 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 85
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 176 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 63
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 176 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 63
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -2
Query: 270 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 97
C H H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = -3
Query: 686 KYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
+Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 690 SEVCFDRKRSPENCE 646
+E+C DRKR P++CE
Sbjct: 81 NELCHDRKRGPDDCE 95
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 76 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRD 255
+ LSR + R+P P ++ +P P T + + +CPV + TMS P + R
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYR- 101
Query: 256 TMVPTRPKLRPPV-IIHKFPDSNLMKSIIFVV 348
P L P + + P S + ++ F++
Sbjct: 102 VHYPLSRVLYPVYRVFYHLPVSFIPYTVSFII 133
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 264 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 94
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 198 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 70
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -3
Query: 494 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 324
E+A +C++ R+ P+ LV G +++ I + Q+ + + +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030
Query: 323 KFESGNLCMITGGRNLGRV 267
K + NLC G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,370,934
Number of Sequences: 59808
Number of extensions: 520684
Number of successful extensions: 1704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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