Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0912
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 312 1e-85
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 312 2e-85
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 312 2e-85
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 33 0.18
At1g29760.1 68414.m03639 expressed protein 31 0.73
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.2
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 29 2.2
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 29 2.2
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 29 2.2
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.0
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.0
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 3.9
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 3.9
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 6.8
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 28 6.8
At3g63100.1 68416.m07087 glycine-rich protein 27 9.0
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 27 9.0
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 312 bits (766), Expect = 1e-85
Identities = 143/211 (67%), Positives = 174/211 (82%)
Frame = -3
Query: 698 RNRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
RNRLKYALT EV+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGR
Sbjct: 49 RNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGR 108
Query: 518 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 339
F +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ K
Sbjct: 109 FRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANK 168
Query: 338 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 159
I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ I
Sbjct: 169 IVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTI 228
Query: 158 GKGTKAYISLPRGKGIRLTIAEERDKRIAAK 66
GKGTK ++SLP+GKGI+LTI EE KR+A++
Sbjct: 229 GKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 312 bits (765), Expect = 2e-85
Identities = 143/211 (67%), Positives = 174/211 (82%)
Frame = -3
Query: 698 RNRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
RNRLKYALT EV+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGR
Sbjct: 49 RNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGR 108
Query: 518 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 339
F +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ K
Sbjct: 109 FRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENK 168
Query: 338 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 159
I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ I
Sbjct: 169 IVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTI 228
Query: 158 GKGTKAYISLPRGKGIRLTIAEERDKRIAAK 66
GKGTK ++SLP+GKGI+LTI EE KR+A++
Sbjct: 229 GKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 312 bits (765), Expect = 2e-85
Identities = 143/211 (67%), Positives = 174/211 (82%)
Frame = -3
Query: 698 RNRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 519
RNRLKYALT EV+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGR
Sbjct: 49 RNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGR 108
Query: 518 FTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTK 339
F +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ K
Sbjct: 109 FRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENK 168
Query: 338 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 159
I++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ I
Sbjct: 169 IVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTI 228
Query: 158 GKGTKAYISLPRGKGIRLTIAEERDKRIAAK 66
GKGTK ++SLP+GKGI+LTI EE KR++A+
Sbjct: 229 GKGTKPWVSLPKGKGIKLTIIEEARKRLSAQ 259
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 216 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 73
HQG+HG + H ++ + + H+G+H + GH H+ G G H+
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQ 203
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 216 HQGLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 73
HQG HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 216 HQGLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 76
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 216 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 52
HQG HG ++H Q +H Q H+G H + GH H+ G H QGR +
Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGM 216
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 607 SVLTFPSTFMRRCFTIFRTSFXVKAYFRRFL 699
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 151 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 246
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 695 NRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 561
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 695 NRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 561
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 695 NRLKYALTXNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 561
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 151 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 246
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 151 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 246
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 287 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 129
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 120 QGHPPHHRRGAGQAHRSQG 64
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 151 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 246
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 419 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 288
H+ + +P ++N+ I+LDI++ I F NL +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -2
Query: 270 CGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 91
CG R + R HC H HG H H GH+ H GH H G
Sbjct: 57 CGGRR--HDYGRDCCHCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHG 101
Query: 90 AGQAHRSQGR 61
G HR GR
Sbjct: 102 HGHGHRRHGR 111
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 344 TKIMDFIKFESGNLCMITGGRNLGRVGT 261
T I+ +IK G + GGRN+G+V T
Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,340
Number of Sequences: 28952
Number of extensions: 341824
Number of successful extensions: 1060
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -