Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0911
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    33   0.038
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    30   0.27 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   0.47 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   0.83 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    28   1.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.5  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   2.5  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   3.3  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   3.3  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   3.3  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   7.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   7.7  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
 Frame = +3

Query: 219 PVVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 389
           P  H     H  ++   P         P +H    HH   P  V H+    DH P K+E 
Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422

Query: 390 SYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDG 494
             S  + H+   +   +    D ++      Q DG
Sbjct: 423 HCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDG 457



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
 Frame = +3

Query: 291 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 437
           P +H    HH   P  V H+    DH P K+E         +S   PH G   DHK  +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366

Query: 438 E--TRDGDVVKG-EYSLLQPDGSIRKVEYTADHHNGFNAIVHN-SEPD 569
           E     G  ++   +++ +PD    K E    H      + HN ++PD
Sbjct: 367 EEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPD 414



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 291 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 386
           P +H    HH   P  V H+    DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 291 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 386
           P +H    HH   P  + H+    DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
 Frame = +3

Query: 315 HHAAIPIAVEHSDHVEDHAPAKYE-----FSYSVEDPHTG---DHKS-QHE--TRDGDVV 461
           HH   P  V H+    DH P K+E       +    PH G   DHK  +HE     G   
Sbjct: 261 HHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGRFP 320

Query: 462 KG-EYSLLQPDGSIRK-VEYTADHHNGFN-AIVHN-SEPD 569
           +   ++  +PD    K  E+ + HH+ F+  + HN ++PD
Sbjct: 321 RPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 565 GSELCTIALNPLWWSAVYSTLRMEPSGWSREYSPFTTSPSRVS 437
           G  +C + L  LW  ++Y+TLR    G + E  PFT S S VS
Sbjct: 12  GIPICGVILLILWGYSLYNTLRFMVPGKATE--PFTLSLSDVS 52


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPV 242
           P  Q T+  +P  SHAAP+   + P   H+ P + A PV
Sbjct: 63  PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -2

Query: 408  DPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRR 229
            D  R++  HT RE     + N RR+ ESQ+  R            ++ +  T NV R R 
Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDRWRQNGNVNRNPRVSNNNST-NVSRERS 1498

Query: 228  EQQDRHVESKGLRESVQEQHD 166
             + +    +   R+ V E  D
Sbjct: 1499 SEANHRTSNDNKRDEVTEGKD 1519


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +3

Query: 126 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHA 305
           PS+Q   ++ P +    P    A+P +Q   P     P    S I AS + +  + ++++
Sbjct: 206 PSNQKPPNFAPGMPAPGPTAVSASPSLQSMPPTNGVIPGAQPS-IEAS-IEKESTSIRNS 263

Query: 306 PVVHHAAI--PIAVEHSDHVEDHAPAK 380
            V +   +   + V  S  VE   P+K
Sbjct: 264 TVTNDRVVNTTVDVSQSQTVETSGPSK 290


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 314 HDWSMLHRAEVLDYWRSMYI 255
           +D+S +   E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 289 ALCNMLQSCTTLR-FQLPSNIPIMSKTMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*K 465
           +LC+++ S +++  F    +   M+   LP   +    S    P   SPN +P++    +
Sbjct: 33  SLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGS----PVAASPNQQPLVESQNR 88

Query: 466 ANTLYSSLMV 495
            N  Y+SL++
Sbjct: 89  RNVTYASLVI 98


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 249 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 410
           S Y+H   VV+     Q  P+  H   P +   SDH +  A  K  F  SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 AHYTPVLSHAAPVLTHAAPL 203
           A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 337 PSNIPIMSKTMLPRSMSSHIPSRIPTPAITSPN 435
           PS IP    T +P    S  P+RIPTP  +S N
Sbjct: 585 PSVIPPRVPTPVPGRTLSPKPTRIPTPIPSSLN 617


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
 Frame = +3

Query: 108 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAG-PV---VHAAPVEHSSYIHASPV 275
           I  H +PS    +     + H  P  T +AP     G PV    H A  +      A P 
Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPE 329

Query: 276 VQHFSPVQHAPVVHHAAIP 332
               S  + AP      +P
Sbjct: 330 PVPASAAERAPTSESTTVP 348


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 351 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 446
           D+V++H P   E +   ++    DH + ++TR
Sbjct: 2   DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 343 NIPIMSKTMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPS 501
           N+   SKT+  R  SSH P    T   +S ++ PV     K N+  SS   PS
Sbjct: 297 NLKYSSKTLSKRDTSSHYPE---TLKASSKHSSPV-----KGNSSISSTWTPS 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,530
Number of Sequences: 5004
Number of extensions: 63579
Number of successful extensions: 257
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)