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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0911
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    39   0.004
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    38   0.009
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    36   0.036
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    34   0.11 
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    33   0.19 
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    31   0.77 
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    31   0.77 
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    31   0.77 
AF106579-5|AAC78198.1|  174|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z99773-4|CAB16925.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z99773-1|CAB16923.2|  406|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z50110-5|CAA90447.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF083878-1|AAD48898.1|  342|Caenorhabditis elegans cyclin-depend...    30   1.8  
Z77667-2|CAB01234.1|  211|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.       28   5.4  
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    28   7.1  
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    28   7.1  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    28   7.1  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic helix-loo...    27   9.4  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 32/121 (26%), Positives = 37/121 (30%)
 Frame = +3

Query: 75  EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 254
           E HGH   S +   H    H A AH+     H      H AP   H     H     H  
Sbjct: 443 ESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEH------HHAPA-HHGHHGEHGTHHGHHG 495

Query: 255 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 434
             H+     H     HAP  H         H  H E H    +   +     H G H S 
Sbjct: 496 SHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555

Query: 435 H 437
           H
Sbjct: 556 H 556



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 40/172 (23%), Positives = 55/172 (31%), Gaps = 14/172 (8%)
 Frame = +3

Query: 81  HGHAVSSQSIVRHDEPS--HQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 254
           HGH  S  S   H      H A AH+     H      H      H  P  H    EH +
Sbjct: 491 HGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE---HHHAPAHHGHHGEHGT 547

Query: 255 Y-----IHASPV------VQHFSPVQHAPVVHHAAIPIAV-EHSDHVEDHAPAKYEFSYS 398
           +      H SP         H +P  H    HH +  +    H  H   H    +   + 
Sbjct: 548 HHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHG 607

Query: 399 VEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNGFNAIVH 554
               H G H + +    G    G +    P       E+  DHH+G + + H
Sbjct: 608 EHGVHHGHHGAGYGAHHGH--HGAHHHHAPHHEHH--EHHGDHHHGSHGVHH 655



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 29/119 (24%), Positives = 38/119 (31%)
 Frame = +3

Query: 81  HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYI 260
           HGH         H     +   H+    SH +P   H      H  P  H    EH ++ 
Sbjct: 468 HGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPA-HHGHHGEHHHAPAHHGHHGEHGTH- 525

Query: 261 HASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 437
           H      H +P  H    HH        H  H   H+PA +   +  E  H   H   H
Sbjct: 526 HGHHGEHHHAPAHHG---HHGEH--GTHHGHHGSHHSPAHH--GHHGEHHHAPAHHGHH 577


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
            protein H11E01.3 protein.
          Length = 1464

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
 Frame = +3

Query: 117  HDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPV 296
            HD     +     P     +   +  +   +H G V  +     S+  H+S   +H    
Sbjct: 662  HDHHDRSSPVASEPAARSPSVQSSRTSEHFEHRGEVPQSPS---SNQFHSS---EHIEEA 715

Query: 297  QHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVEDPHTGDHKSQH-ETRD 449
            + +PV +  ++  P A EH +H E   H+PA  + EF  S SV  PH  +H   H E + 
Sbjct: 716  RQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVHSPHVSEHFEHHEEAQH 775

Query: 450  GDVVKGEYSLLQPDGSIRKVEYTADHH 530
              V   E +   P           +HH
Sbjct: 776  SPVASQEEAARSPSVHSSHASEHFEHH 802



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
 Frame = +3

Query: 75   EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVH--AAPVE- 245
            E  G    S S  +     H   A  +PV +  +    HA+   +H   V H  AA  E 
Sbjct: 692  EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEE 751

Query: 246  --HSSYIHASPVVQHF---SPVQHAPVV-HHAAIPIAVEHSDHVEDH 368
               S  +H+  V +HF      QH+PV     A      HS H  +H
Sbjct: 752  FGRSPSVHSPHVSEHFEHHEEAQHSPVASQEEAARSPSVHSSHASEH 798



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 1/117 (0%)
 Frame = +3

Query: 93  VSSQSIVRHDEP-SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHAS 269
           V S++   H E  S  A+ H    L      +  +      + PV  + P   S  + +S
Sbjct: 627 VQSENFEHHAEVHSFHASEHIDEALPSPVQSVHSSHDHHDRSSPVA-SEPAARSPSVQSS 685

Query: 270 PVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHE 440
              +HF   +H   V  +        S+H+E+   +      SV  PH  +H    E
Sbjct: 686 RTSEHF---EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHRE 739



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
 Frame = +3

Query: 111 VRHDEPSHQATAHYTPVLS-HAAPVLTHAAPLIQHAGPVVHAAPV-EH-SSYIHASPVVQ 281
           V  D  +H      +PV S H++    H     Q   P VH++   EH       SPV  
Sbjct: 556 VHTDHKAHSEDVPQSPVQSVHSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVAS 615

Query: 282 HFS-PVQHAPVV------HHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPH 413
               P   +P+V      HHA +  +   S+H+++  P+  +  +S  D H
Sbjct: 616 ERDVPSAESPLVQSENFEHHAEVH-SFHASEHIDEALPSPVQSVHSSHDHH 665


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = +3

Query: 90  AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVL---THAAPLIQHAGPVVHAAPVEHSSYI 260
           A + Q  V    P  Q      PV   A P       A P++Q A PV  A+P   +  +
Sbjct: 179 APTQQPPVVQQTPPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPV 238

Query: 261 HASPVVQHFSP--VQHAPVVHHAAIP 332
              PVVQ      VQ APVV  A  P
Sbjct: 239 QQQPVVQAPPKPIVQQAPVVQQAPPP 264



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 99  SQSIVRHDEPSHQATAHYTPVLSHAAPVL-THAAPLIQHAGPVVHAAPVEHSSYIHASPV 275
           +Q +V+   P  QA+           PV+     P++Q A PVV  AP        A PV
Sbjct: 216 AQPVVQQAPPVQQASPKPVAQPVQQQPVVQAPPKPIVQQA-PVVQQAPPPKQQQAQAQPV 274

Query: 276 VQHFSPVQHAPVVHHAAIPI 335
            Q   P   APVV  A+ P+
Sbjct: 275 QQ---PPNPAPVVQQASAPV 291


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 240 VEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 377
           VE SSYIH+S  +QH     H P      +   ++H  H     P+
Sbjct: 87  VESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
           protein.
          Length = 1198

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = -2

Query: 384 HTSREHGLRHDRNVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRREQQDRHVE 205
           H+S+    R D ++   L +++   L+ +AQG         V+   +P G+REQ+D+  +
Sbjct: 27  HSSKSFRNRRDNDLLDWLTAEQKVSLKDIAQGTEEFKKKVAVFYNELPSGKREQRDKFYK 86

Query: 204 SKGLRESVQEQ 172
           +  L+ + + Q
Sbjct: 87  THCLQWTAKAQ 97


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
 Frame = -2

Query: 462 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQ--G 289
           S+HHHH  +    D+     +++ R H  RE     D    R+ + +   R +   +   
Sbjct: 114 SKHHHHHHKKERKDKEHKKHKKD-REHRDREKERERDERKERERQQKEKEREDAARREIE 172

Query: 288 *SVGLLAKHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDS 163
               + AK V  +   R R+E++ R  E K  +E ++E+  S
Sbjct: 173 EKAEMDAKRVAEEEEER-RKEKEKRREEKKKQKELLKEKERS 213


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 90   AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 263
            A  +Q   + +  SH  T    P  S+ AP    A  + QH+  G  + A P   S + H
Sbjct: 1212 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1271

Query: 264  ASPVVQHFSPVQHAPVVHHA 323
             +     F+P   AP   HA
Sbjct: 1272 IAAPQARFTPTPGAPSPWHA 1291


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 90   AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 263
            A  +Q   + +  SH  T    P  S+ AP    A  + QH+  G  + A P   S + H
Sbjct: 1232 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1291

Query: 264  ASPVVQHFSPVQHAPVVHHA 323
             +     F+P   AP   HA
Sbjct: 1292 IAAPQARFTPTPGAPSPWHA 1311


>AF106579-5|AAC78198.1|  174|Caenorhabditis elegans Hypothetical
           protein F54E2.2 protein.
          Length = 174

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 322 AWCTTGACCTGLKCWTTGEACIYEEC 245
           +WCTT   C G KC  TG  C Y  C
Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173


>Z99773-4|CAB16925.1|  342|Caenorhabditis elegans Hypothetical
           protein F18H3.5a protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
           H + +N+PRG  EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155


>Z99773-1|CAB16923.2|  406|Caenorhabditis elegans Hypothetical
           protein F18H3.5b protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
           H + +N+PRG  EQQ +HV ++ +R
Sbjct: 195 HTFLRNIPRGVPEQQAKHVTAQIVR 219


>Z50110-5|CAA90447.1|  342|Caenorhabditis elegans Hypothetical
           protein F18H3.5a protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
           H + +N+PRG  EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155


>AF083878-1|AAD48898.1|  342|Caenorhabditis elegans cyclin-dependent
           kinase CDK-4 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
           H + +N+PRG  EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155


>Z77667-2|CAB01234.1|  211|Caenorhabditis elegans Hypothetical
           protein M04B2.3 protein.
          Length = 211

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 267 KHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDSILGYNVPLLDEK 127
           + V T+    G   Q++   E + LRES+++ H  I+ YN  L +++
Sbjct: 165 EQVKTRTRELGEVAQKEIAAEIEDLRESLKDAHKMIVKYNTELAEQE 211


>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
          Length = 1666

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
           H   V  +S +  S V    SP+   P  +H+  + I + +  H+  H    +E    V 
Sbjct: 322 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTGVG 381

Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
                 + SQH    DG  ++G ++ +
Sbjct: 382 SDSQMSNFSQHNIYLDGPDIRGRHAAI 408


>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
           protein W03F11.6e protein.
          Length = 1039

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
           H   V  +S +  S V    SP+   P  +H+  + I + +  H+  H    +E    V 
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379

Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
                 + SQH    DG  ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406


>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
           protein W03F11.6d protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
           H   V  +S +  S V    SP+   P  +H+  + I + +  H+  H    +E    V 
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379

Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
                 + SQH    DG  ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406


>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
           protein W03F11.6c protein.
          Length = 1419

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
           H   V  +S +  S V    SP+   P  +H+  + I + +  H+  H    +E    V 
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379

Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
                 + SQH    DG  ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406


>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
           protein W03F11.6a protein.
          Length = 1658

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
           H   V  +S +  S V    SP+   P  +H+  + I + +  H+  H    +E    V 
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379

Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
                 + SQH    DG  ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 156 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 335
           P  +  APVL   APL+    P V AAP    +    +PV    +PV   P   +A  P+
Sbjct: 101 PFFASPAPVLAAPAPLLAPPAP-VFAAPRPVFAAPALAPVAP-MAPVLRGPAFAYAPSPV 158


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 437 VLGLVIAGVGILDGI*ELILRGSMVFDMIGM 345
           +LG+V AG+ IL G+  L L G    D++G+
Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/88 (21%), Positives = 35/88 (39%)
 Frame = +2

Query: 92  CVFPKHSPP*RAFSSSNGTLYPSIESCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFA 271
           C   +H    + F S +G  Y   E+C  C+   +P               TF+   C+ 
Sbjct: 98  CTQCQHQIQDKFFLSIDGRNYH--ENCLQCSTCENPLSNKCFYKDK-----TFYCKGCYF 150

Query: 272 SSPTLQPCATCSSRAPRCDSNCRRTFRS 355
            +      ++C    P+C ++C RT ++
Sbjct: 151 RTHVTSTASSCRELGPKC-ASCDRTIQA 177


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/88 (21%), Positives = 35/88 (39%)
 Frame = +2

Query: 92  CVFPKHSPP*RAFSSSNGTLYPSIESCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFA 271
           C   +H    + F S +G  Y   E+C  C+   +P               TF+   C+ 
Sbjct: 98  CTQCQHQIQDKFFLSIDGRNYH--ENCLQCSTCENPLSNKCFYKDK-----TFYCKGCYF 150

Query: 272 SSPTLQPCATCSSRAPRCDSNCRRTFRS 355
            +      ++C    P+C ++C RT ++
Sbjct: 151 RTHVTSTASSCRELGPKC-ASCDRTIQA 177


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = -2

Query: 483 GVESIRLSRHHHHGFRVGTC--DRRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGAR 310
           G +  R +  HHH  R      D R  D R   R H   +   R DR+  R   S+R  R
Sbjct: 271 GADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDRH--RSERSERSER 328

Query: 309 LE 304
            E
Sbjct: 329 SE 330


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 123 EPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSP 293
           +P+    A+  P    A P      P+I    P    AP  ++S   A PV + F P
Sbjct: 455 KPAVSYDAYEEPPAEPAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEP 511


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +3

Query: 156 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 335
           PV++ AAP    A      A P++ AAP   ++ I+  PV    +P   AP    AA+P 
Sbjct: 100 PVVA-AAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA--APA-FAPAFAPAAVPA 155

Query: 336 AV 341
           AV
Sbjct: 156 AV 157


>Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical
           protein T24B8.6 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 310 SCTTLRFQLPSNIPIMSKT-MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS 459
           S T+    +P++ P   ++ + P+S+ S + ++ P+P+ TSP   P  +MS
Sbjct: 119 SSTSFHNSMPADFPTPEQSPVYPQSVCSMM-AQTPSPSYTSPYYPPPQMMS 168


>Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical
           protein R01E6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = +3

Query: 231 AAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 410
           A+P+ HSS+ +AS    +    QH    H  A     EHS H      AK E  YS +D 
Sbjct: 2   ASPISHSSHENASGKYGYGDESQHGKNFHQKA-----EHSGH-----EAK-EKGYS-QDG 49

Query: 411 HTGDHKSQHE 440
              DH + H+
Sbjct: 50  KAADHDALHK 59


>U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic
           helix-loop-helix DNA bindingprotein HLH-3 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 310 SCTTLRFQLPSNIPIMSKT-MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS 459
           S T+    +P++ P   ++ + P+S+ S + ++ P+P+ TSP   P  +MS
Sbjct: 86  SSTSFHNSMPADFPTPEQSPVYPQSVCSMM-AQTPSPSYTSPYYPPPQMMS 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,584
Number of Sequences: 27780
Number of extensions: 388792
Number of successful extensions: 1402
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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