BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0911 (685 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.004 AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 38 0.009 Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 36 0.036 U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 34 0.11 AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 33 0.19 Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.77 EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 31 0.77 AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 31 0.77 AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 31 0.77 Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.8 Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical pr... 30 1.8 Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.8 AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-depend... 30 1.8 Z77667-2|CAB01234.1| 211|Caenorhabditis elegans Hypothetical pr... 29 3.1 AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 5.4 AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 5.4 AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 5.4 AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 5.4 AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 5.4 Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 7.1 U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 28 7.1 U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 28 7.1 U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 28 7.1 AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 28 7.1 Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 27 9.4 Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 27 9.4 Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 27 9.4 Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical pr... 27 9.4 U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 27 9.4 >AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical protein Y39B6A.1 protein. Length = 735 Score = 38.7 bits (86), Expect = 0.004 Identities = 32/121 (26%), Positives = 37/121 (30%) Frame = +3 Query: 75 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 254 E HGH S + H H A AH+ H H AP H H H Sbjct: 443 ESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEH------HHAPA-HHGHHGEHGTHHGHHG 495 Query: 255 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 434 H+ H HAP H H H E H + + H G H S Sbjct: 496 SHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555 Query: 435 H 437 H Sbjct: 556 H 556 Score = 33.9 bits (74), Expect = 0.11 Identities = 40/172 (23%), Positives = 55/172 (31%), Gaps = 14/172 (8%) Frame = +3 Query: 81 HGHAVSSQSIVRHDEPS--HQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 254 HGH S S H H A AH+ H H H P H EH + Sbjct: 491 HGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE---HHHAPAHHGHHGEHGT 547 Query: 255 Y-----IHASPV------VQHFSPVQHAPVVHHAAIPIAV-EHSDHVEDHAPAKYEFSYS 398 + H SP H +P H HH + + H H H + + Sbjct: 548 HHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHG 607 Query: 399 VEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNGFNAIVH 554 H G H + + G G + P E+ DHH+G + + H Sbjct: 608 EHGVHHGHHGAGYGAHHGH--HGAHHHHAPHHEHH--EHHGDHHHGSHGVHH 655 Score = 32.7 bits (71), Expect = 0.25 Identities = 29/119 (24%), Positives = 38/119 (31%) Frame = +3 Query: 81 HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYI 260 HGH H + H+ SH +P H H P H EH ++ Sbjct: 468 HGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPA-HHGHHGEHHHAPAHHGHHGEHGTH- 525 Query: 261 HASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 437 H H +P H HH H H H+PA + + E H H H Sbjct: 526 HGHHGEHHHAPAHHG---HHGEH--GTHHGHHGSHHSPAHH--GHHGEHHHAPAHHGHH 577 >AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical protein H11E01.3 protein. Length = 1464 Score = 37.5 bits (83), Expect = 0.009 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 9/147 (6%) Frame = +3 Query: 117 HDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPV 296 HD + P + + + +H G V + S+ H+S +H Sbjct: 662 HDHHDRSSPVASEPAARSPSVQSSRTSEHFEHRGEVPQSPS---SNQFHSS---EHIEEA 715 Query: 297 QHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVEDPHTGDHKSQH-ETRD 449 + +PV + ++ P A EH +H E H+PA + EF S SV PH +H H E + Sbjct: 716 RQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVHSPHVSEHFEHHEEAQH 775 Query: 450 GDVVKGEYSLLQPDGSIRKVEYTADHH 530 V E + P +HH Sbjct: 776 SPVASQEEAARSPSVHSSHASEHFEHH 802 Score = 33.1 bits (72), Expect = 0.19 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Frame = +3 Query: 75 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVH--AAPVE- 245 E G S S + H A +PV + + HA+ +H V H AA E Sbjct: 692 EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEE 751 Query: 246 --HSSYIHASPVVQHF---SPVQHAPVV-HHAAIPIAVEHSDHVEDH 368 S +H+ V +HF QH+PV A HS H +H Sbjct: 752 FGRSPSVHSPHVSEHFEHHEEAQHSPVASQEEAARSPSVHSSHASEH 798 Score = 30.7 bits (66), Expect = 1.0 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 1/117 (0%) Frame = +3 Query: 93 VSSQSIVRHDEP-SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHAS 269 V S++ H E S A+ H L + + + PV + P S + +S Sbjct: 627 VQSENFEHHAEVHSFHASEHIDEALPSPVQSVHSSHDHHDRSSPVA-SEPAARSPSVQSS 685 Query: 270 PVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHE 440 +HF +H V + S+H+E+ + SV PH +H E Sbjct: 686 RTSEHF---EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHRE 739 Score = 29.1 bits (62), Expect = 3.1 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%) Frame = +3 Query: 111 VRHDEPSHQATAHYTPVLS-HAAPVLTHAAPLIQHAGPVVHAAPV-EH-SSYIHASPVVQ 281 V D +H +PV S H++ H Q P VH++ EH SPV Sbjct: 556 VHTDHKAHSEDVPQSPVQSVHSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVAS 615 Query: 282 HFS-PVQHAPVV------HHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPH 413 P +P+V HHA + + S+H+++ P+ + +S D H Sbjct: 616 ERDVPSAESPLVQSENFEHHAEVH-SFHASEHIDEALPSPVQSVHSSHDHH 665 >Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical protein Y49E10.29 protein. Length = 559 Score = 35.5 bits (78), Expect = 0.036 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Frame = +3 Query: 90 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVL---THAAPLIQHAGPVVHAAPVEHSSYI 260 A + Q V P Q PV A P A P++Q A PV A+P + + Sbjct: 179 APTQQPPVVQQTPPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPV 238 Query: 261 HASPVVQHFSP--VQHAPVVHHAAIP 332 PVVQ VQ APVV A P Sbjct: 239 QQQPVVQAPPKPIVQQAPVVQQAPPP 264 Score = 34.3 bits (75), Expect = 0.082 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = +3 Query: 99 SQSIVRHDEPSHQATAHYTPVLSHAAPVL-THAAPLIQHAGPVVHAAPVEHSSYIHASPV 275 +Q +V+ P QA+ PV+ P++Q A PVV AP A PV Sbjct: 216 AQPVVQQAPPVQQASPKPVAQPVQQQPVVQAPPKPIVQQA-PVVQQAPPPKQQQAQAQPV 274 Query: 276 VQHFSPVQHAPVVHHAAIPI 335 Q P APVV A+ P+ Sbjct: 275 QQ---PPNPAPVVQQASAPV 291 >U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting protein protein16, isoform d protein. Length = 1030 Score = 33.9 bits (74), Expect = 0.11 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 240 VEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 377 VE SSYIH+S +QH H P + ++H H P+ Sbjct: 87 VESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132 >AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein protein. Length = 1198 Score = 33.1 bits (72), Expect = 0.19 Identities = 18/71 (25%), Positives = 37/71 (52%) Frame = -2 Query: 384 HTSREHGLRHDRNVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRREQQDRHVE 205 H+S+ R D ++ L +++ L+ +AQG V+ +P G+REQ+D+ + Sbjct: 27 HSSKSFRNRRDNDLLDWLTAEQKVSLKDIAQGTEEFKKKVAVFYNELPSGKREQRDKFYK 86 Query: 204 SKGLRESVQEQ 172 + L+ + + Q Sbjct: 87 THCLQWTAKAQ 97 >Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical protein C11G6.3 protein. Length = 385 Score = 31.1 bits (67), Expect = 0.77 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Frame = -2 Query: 462 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQ--G 289 S+HHHH + D+ +++ R H RE D R+ + + R + + Sbjct: 114 SKHHHHHHKKERKDKEHKKHKKD-REHRDREKERERDERKERERQQKEKEREDAARREIE 172 Query: 288 *SVGLLAKHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDS 163 + AK V + R R+E++ R E K +E ++E+ S Sbjct: 173 EKAEMDAKRVAEEEEER-RKEKEKRREEKKKQKELLKEKERS 213 >EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1 protein. Length = 1492 Score = 31.1 bits (67), Expect = 0.77 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +3 Query: 90 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 263 A +Q + + SH T P S+ AP A + QH+ G + A P S + H Sbjct: 1212 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1271 Query: 264 ASPVVQHFSPVQHAPVVHHA 323 + F+P AP HA Sbjct: 1272 IAAPQARFTPTPGAPSPWHA 1291 >AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical protein Y53H1C.2a protein. Length = 1512 Score = 31.1 bits (67), Expect = 0.77 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +3 Query: 90 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 263 A +Q + + SH T P S+ AP A + QH+ G + A P S + H Sbjct: 1232 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1291 Query: 264 ASPVVQHFSPVQHAPVVHHA 323 + F+P AP HA Sbjct: 1292 IAAPQARFTPTPGAPSPWHA 1311 >AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical protein F54E2.2 protein. Length = 174 Score = 31.1 bits (67), Expect = 0.77 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 322 AWCTTGACCTGLKCWTTGEACIYEEC 245 +WCTT C G KC TG C Y C Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173 >Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical protein F18H3.5a protein. Length = 342 Score = 29.9 bits (64), Expect = 1.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190 H + +N+PRG EQQ +HV ++ +R Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155 >Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical protein F18H3.5b protein. Length = 406 Score = 29.9 bits (64), Expect = 1.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190 H + +N+PRG EQQ +HV ++ +R Sbjct: 195 HTFLRNIPRGVPEQQAKHVTAQIVR 219 >Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical protein F18H3.5a protein. Length = 342 Score = 29.9 bits (64), Expect = 1.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190 H + +N+PRG EQQ +HV ++ +R Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155 >AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-dependent kinase CDK-4 protein. Length = 342 Score = 29.9 bits (64), Expect = 1.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190 H + +N+PRG EQQ +HV ++ +R Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155 >Z77667-2|CAB01234.1| 211|Caenorhabditis elegans Hypothetical protein M04B2.3 protein. Length = 211 Score = 29.1 bits (62), Expect = 3.1 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -2 Query: 267 KHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDSILGYNVPLLDEK 127 + V T+ G Q++ E + LRES+++ H I+ YN L +++ Sbjct: 165 EQVKTRTRELGEVAQKEIAAEIEDLRESLKDAHKMIVKYNTELAEQE 211 >AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. Length = 1666 Score = 28.3 bits (60), Expect = 5.4 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404 H V +S + S V SP+ P +H+ + I + + H+ H +E V Sbjct: 322 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTGVG 381 Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482 + SQH DG ++G ++ + Sbjct: 382 SDSQMSNFSQHNIYLDGPDIRGRHAAI 408 >AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical protein W03F11.6e protein. Length = 1039 Score = 28.3 bits (60), Expect = 5.4 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404 H V +S + S V SP+ P +H+ + I + + H+ H +E V Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379 Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482 + SQH DG ++G ++ + Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406 >AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical protein W03F11.6d protein. Length = 1184 Score = 28.3 bits (60), Expect = 5.4 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404 H V +S + S V SP+ P +H+ + I + + H+ H +E V Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379 Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482 + SQH DG ++G ++ + Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406 >AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical protein W03F11.6c protein. Length = 1419 Score = 28.3 bits (60), Expect = 5.4 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404 H V +S + S V SP+ P +H+ + I + + H+ H +E V Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379 Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482 + SQH DG ++G ++ + Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406 >AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical protein W03F11.6a protein. Length = 1658 Score = 28.3 bits (60), Expect = 5.4 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = +3 Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404 H V +S + S V SP+ P +H+ + I + + H+ H +E V Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379 Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482 + SQH DG ++G ++ + Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406 >Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical protein T06E4.9 protein. Length = 212 Score = 27.9 bits (59), Expect = 7.1 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +3 Query: 156 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 335 P + APVL APL+ P V AAP + +PV +PV P +A P+ Sbjct: 101 PFFASPAPVLAAPAPLLAPPAP-VFAAPRPVFAAPALAPVAP-MAPVLRGPAFAYAPSPV 158 >U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related family protein 2 protein. Length = 933 Score = 27.9 bits (59), Expect = 7.1 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 Query: 437 VLGLVIAGVGILDGI*ELILRGSMVFDMIGM 345 +LG+V AG+ IL G+ L L G D++G+ Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334 >U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transcription factor LIM-4 protein. Length = 355 Score = 27.9 bits (59), Expect = 7.1 Identities = 19/88 (21%), Positives = 35/88 (39%) Frame = +2 Query: 92 CVFPKHSPP*RAFSSSNGTLYPSIESCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFA 271 C +H + F S +G Y E+C C+ +P TF+ C+ Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYH--ENCLQCSTCENPLSNKCFYKDK-----TFYCKGCYF 150 Query: 272 SSPTLQPCATCSSRAPRCDSNCRRTFRS 355 + ++C P+C ++C RT ++ Sbjct: 151 RTHVTSTASSCRELGPKC-ASCDRTIQA 177 >U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family protein 4 protein. Length = 355 Score = 27.9 bits (59), Expect = 7.1 Identities = 19/88 (21%), Positives = 35/88 (39%) Frame = +2 Query: 92 CVFPKHSPP*RAFSSSNGTLYPSIESCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFA 271 C +H + F S +G Y E+C C+ +P TF+ C+ Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYH--ENCLQCSTCENPLSNKCFYKDK-----TFYCKGCYF 150 Query: 272 SSPTLQPCATCSSRAPRCDSNCRRTFRS 355 + ++C P+C ++C RT ++ Sbjct: 151 RTHVTSTASSCRELGPKC-ASCDRTIQA 177 >AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical protein Y119D3B.12a protein. Length = 339 Score = 27.9 bits (59), Expect = 7.1 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Frame = -2 Query: 483 GVESIRLSRHHHHGFRVGTC--DRRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGAR 310 G + R + HHH R D R D R R H + R DR+ R S+R R Sbjct: 271 GADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDRH--RSERSERSER 328 Query: 309 LE 304 E Sbjct: 329 SE 330 >Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical protein K08E3.4 protein. Length = 643 Score = 27.5 bits (58), Expect = 9.4 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = +3 Query: 123 EPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSP 293 +P+ A+ P A P P+I P AP ++S A PV + F P Sbjct: 455 KPAVSYDAYEEPPAEPAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEP 511 >Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical protein T06E4.10 protein. Length = 180 Score = 27.5 bits (58), Expect = 9.4 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +3 Query: 156 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 335 PV++ AAP A A P++ AAP ++ I+ PV +P AP AA+P Sbjct: 100 PVVA-AAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA--APA-FAPAFAPAAVPA 155 Query: 336 AV 341 AV Sbjct: 156 AV 157 >Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical protein T24B8.6 protein. Length = 203 Score = 27.5 bits (58), Expect = 9.4 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +1 Query: 310 SCTTLRFQLPSNIPIMSKT-MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS 459 S T+ +P++ P ++ + P+S+ S + ++ P+P+ TSP P +MS Sbjct: 119 SSTSFHNSMPADFPTPEQSPVYPQSVCSMM-AQTPSPSYTSPYYPPPQMMS 168 >Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical protein R01E6.5 protein. Length = 245 Score = 27.5 bits (58), Expect = 9.4 Identities = 24/70 (34%), Positives = 32/70 (45%) Frame = +3 Query: 231 AAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 410 A+P+ HSS+ +AS + QH H A EHS H AK E YS +D Sbjct: 2 ASPISHSSHENASGKYGYGDESQHGKNFHQKA-----EHSGH-----EAK-EKGYS-QDG 49 Query: 411 HTGDHKSQHE 440 DH + H+ Sbjct: 50 KAADHDALHK 59 >U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loop-helix DNA bindingprotein HLH-3 protein. Length = 185 Score = 27.5 bits (58), Expect = 9.4 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +1 Query: 310 SCTTLRFQLPSNIPIMSKT-MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS 459 S T+ +P++ P ++ + P+S+ S + ++ P+P+ TSP P +MS Sbjct: 86 SSTSFHNSMPADFPTPEQSPVYPQSVCSMM-AQTPSPSYTSPYYPPPQMMS 135 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,206,584 Number of Sequences: 27780 Number of extensions: 388792 Number of successful extensions: 1402 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1242 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1376 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1560745544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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