Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0911
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.004
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 38 0.009
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 36 0.036
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 34 0.11
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 33 0.19
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.77
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 31 0.77
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 31 0.77
AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 31 0.77
Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-depend... 30 1.8
Z77667-2|CAB01234.1| 211|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 5.4
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 5.4
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 5.4
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 5.4
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 5.4
Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 7.1
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 28 7.1
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 28 7.1
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 28 7.1
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 28 7.1
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 27 9.4
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical pr... 27 9.4
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 27 9.4
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/121 (26%), Positives = 37/121 (30%)
Frame = +3
Query: 75 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 254
E HGH S + H H A AH+ H H AP H H H
Sbjct: 443 ESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEH------HHAPA-HHGHHGEHGTHHGHHG 495
Query: 255 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 434
H+ H HAP H H H E H + + H G H S
Sbjct: 496 SHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555
Query: 435 H 437
H
Sbjct: 556 H 556
Score = 33.9 bits (74), Expect = 0.11
Identities = 40/172 (23%), Positives = 55/172 (31%), Gaps = 14/172 (8%)
Frame = +3
Query: 81 HGHAVSSQSIVRHDEPS--HQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 254
HGH S S H H A AH+ H H H P H EH +
Sbjct: 491 HGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE---HHHAPAHHGHHGEHGT 547
Query: 255 Y-----IHASPV------VQHFSPVQHAPVVHHAAIPIAV-EHSDHVEDHAPAKYEFSYS 398
+ H SP H +P H HH + + H H H + +
Sbjct: 548 HHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHG 607
Query: 399 VEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNGFNAIVH 554
H G H + + G G + P E+ DHH+G + + H
Sbjct: 608 EHGVHHGHHGAGYGAHHGH--HGAHHHHAPHHEHH--EHHGDHHHGSHGVHH 655
Score = 32.7 bits (71), Expect = 0.25
Identities = 29/119 (24%), Positives = 38/119 (31%)
Frame = +3
Query: 81 HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYI 260
HGH H + H+ SH +P H H P H EH ++
Sbjct: 468 HGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPA-HHGHHGEHHHAPAHHGHHGEHGTH- 525
Query: 261 HASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 437
H H +P H HH H H H+PA + + E H H H
Sbjct: 526 HGHHGEHHHAPAHHG---HHGEH--GTHHGHHGSHHSPAHH--GHHGEHHHAPAHHGHH 577
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Frame = +3
Query: 117 HDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPV 296
HD + P + + + +H G V + S+ H+S +H
Sbjct: 662 HDHHDRSSPVASEPAARSPSVQSSRTSEHFEHRGEVPQSPS---SNQFHSS---EHIEEA 715
Query: 297 QHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVEDPHTGDHKSQH-ETRD 449
+ +PV + ++ P A EH +H E H+PA + EF S SV PH +H H E +
Sbjct: 716 RQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVHSPHVSEHFEHHEEAQH 775
Query: 450 GDVVKGEYSLLQPDGSIRKVEYTADHH 530
V E + P +HH
Sbjct: 776 SPVASQEEAARSPSVHSSHASEHFEHH 802
Score = 33.1 bits (72), Expect = 0.19
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Frame = +3
Query: 75 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVH--AAPVE- 245
E G S S + H A +PV + + HA+ +H V H AA E
Sbjct: 692 EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEE 751
Query: 246 --HSSYIHASPVVQHF---SPVQHAPVV-HHAAIPIAVEHSDHVEDH 368
S +H+ V +HF QH+PV A HS H +H
Sbjct: 752 FGRSPSVHSPHVSEHFEHHEEAQHSPVASQEEAARSPSVHSSHASEH 798
Score = 30.7 bits (66), Expect = 1.0
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 1/117 (0%)
Frame = +3
Query: 93 VSSQSIVRHDEP-SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHAS 269
V S++ H E S A+ H L + + + PV + P S + +S
Sbjct: 627 VQSENFEHHAEVHSFHASEHIDEALPSPVQSVHSSHDHHDRSSPVA-SEPAARSPSVQSS 685
Query: 270 PVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHE 440
+HF +H V + S+H+E+ + SV PH +H E
Sbjct: 686 RTSEHF---EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHRE 739
Score = 29.1 bits (62), Expect = 3.1
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Frame = +3
Query: 111 VRHDEPSHQATAHYTPVLS-HAAPVLTHAAPLIQHAGPVVHAAPV-EH-SSYIHASPVVQ 281
V D +H +PV S H++ H Q P VH++ EH SPV
Sbjct: 556 VHTDHKAHSEDVPQSPVQSVHSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVAS 615
Query: 282 HFS-PVQHAPVV------HHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPH 413
P +P+V HHA + + S+H+++ P+ + +S D H
Sbjct: 616 ERDVPSAESPLVQSENFEHHAEVH-SFHASEHIDEALPSPVQSVHSSHDHH 665
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 35.5 bits (78), Expect = 0.036
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 90 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVL---THAAPLIQHAGPVVHAAPVEHSSYI 260
A + Q V P Q PV A P A P++Q A PV A+P + +
Sbjct: 179 APTQQPPVVQQTPPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPV 238
Query: 261 HASPVVQHFSP--VQHAPVVHHAAIP 332
PVVQ VQ APVV A P
Sbjct: 239 QQQPVVQAPPKPIVQQAPVVQQAPPP 264
Score = 34.3 bits (75), Expect = 0.082
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 99 SQSIVRHDEPSHQATAHYTPVLSHAAPVL-THAAPLIQHAGPVVHAAPVEHSSYIHASPV 275
+Q +V+ P QA+ PV+ P++Q A PVV AP A PV
Sbjct: 216 AQPVVQQAPPVQQASPKPVAQPVQQQPVVQAPPKPIVQQA-PVVQQAPPPKQQQAQAQPV 274
Query: 276 VQHFSPVQHAPVVHHAAIPI 335
Q P APVV A+ P+
Sbjct: 275 QQ---PPNPAPVVQQASAPV 291
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 240 VEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 377
VE SSYIH+S +QH H P + ++H H P+
Sbjct: 87 VESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = -2
Query: 384 HTSREHGLRHDRNVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRREQQDRHVE 205
H+S+ R D ++ L +++ L+ +AQG V+ +P G+REQ+D+ +
Sbjct: 27 HSSKSFRNRRDNDLLDWLTAEQKVSLKDIAQGTEEFKKKVAVFYNELPSGKREQRDKFYK 86
Query: 204 SKGLRESVQEQ 172
+ L+ + + Q
Sbjct: 87 THCLQWTAKAQ 97
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.77
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = -2
Query: 462 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQ--G 289
S+HHHH + D+ +++ R H RE D R+ + + R + +
Sbjct: 114 SKHHHHHHKKERKDKEHKKHKKD-REHRDREKERERDERKERERQQKEKEREDAARREIE 172
Query: 288 *SVGLLAKHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDS 163
+ AK V + R R+E++ R E K +E ++E+ S
Sbjct: 173 EKAEMDAKRVAEEEEER-RKEKEKRREEKKKQKELLKEKERS 213
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 90 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 263
A +Q + + SH T P S+ AP A + QH+ G + A P S + H
Sbjct: 1212 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1271
Query: 264 ASPVVQHFSPVQHAPVVHHA 323
+ F+P AP HA
Sbjct: 1272 IAAPQARFTPTPGAPSPWHA 1291
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 90 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 263
A +Q + + SH T P S+ AP A + QH+ G + A P S + H
Sbjct: 1232 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1291
Query: 264 ASPVVQHFSPVQHAPVVHHA 323
+ F+P AP HA
Sbjct: 1292 IAAPQARFTPTPGAPSPWHA 1311
>AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical
protein F54E2.2 protein.
Length = 174
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 322 AWCTTGACCTGLKCWTTGEACIYEEC 245
+WCTT C G KC TG C Y C
Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173
>Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
H + +N+PRG EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155
>Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical
protein F18H3.5b protein.
Length = 406
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
H + +N+PRG EQQ +HV ++ +R
Sbjct: 195 HTFLRNIPRGVPEQQAKHVTAQIVR 219
>Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
H + +N+PRG EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155
>AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-dependent
kinase CDK-4 protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 264 HVYTKNVPRGRREQQDRHVESKGLR 190
H + +N+PRG EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155
>Z77667-2|CAB01234.1| 211|Caenorhabditis elegans Hypothetical
protein M04B2.3 protein.
Length = 211
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 267 KHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDSILGYNVPLLDEK 127
+ V T+ G Q++ E + LRES+++ H I+ YN L +++
Sbjct: 165 EQVKTRTRELGEVAQKEIAAEIEDLRESLKDAHKMIVKYNTELAEQE 211
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 322 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTGVG 381
Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
+ SQH DG ++G ++ +
Sbjct: 382 SDSQMSNFSQHNIYLDGPDIRGRHAAI 408
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 228 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 404
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 405 DPHTGDHKSQHET-RDGDVVKGEYSLL 482
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical
protein T06E4.9 protein.
Length = 212
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 156 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 335
P + APVL APL+ P V AAP + +PV +PV P +A P+
Sbjct: 101 PFFASPAPVLAAPAPLLAPPAP-VFAAPRPVFAAPALAPVAP-MAPVLRGPAFAYAPSPV 158
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 437 VLGLVIAGVGILDGI*ELILRGSMVFDMIGM 345
+LG+V AG+ IL G+ L L G D++G+
Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/88 (21%), Positives = 35/88 (39%)
Frame = +2
Query: 92 CVFPKHSPP*RAFSSSNGTLYPSIESCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFA 271
C +H + F S +G Y E+C C+ +P TF+ C+
Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYH--ENCLQCSTCENPLSNKCFYKDK-----TFYCKGCYF 150
Query: 272 SSPTLQPCATCSSRAPRCDSNCRRTFRS 355
+ ++C P+C ++C RT ++
Sbjct: 151 RTHVTSTASSCRELGPKC-ASCDRTIQA 177
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/88 (21%), Positives = 35/88 (39%)
Frame = +2
Query: 92 CVFPKHSPP*RAFSSSNGTLYPSIESCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFA 271
C +H + F S +G Y E+C C+ +P TF+ C+
Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYH--ENCLQCSTCENPLSNKCFYKDK-----TFYCKGCYF 150
Query: 272 SSPTLQPCATCSSRAPRCDSNCRRTFRS 355
+ ++C P+C ++C RT ++
Sbjct: 151 RTHVTSTASSCRELGPKC-ASCDRTIQA 177
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 483 GVESIRLSRHHHHGFRVGTC--DRRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGAR 310
G + R + HHH R D R D R R H + R DR+ R S+R R
Sbjct: 271 GADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDRH--RSERSERSER 328
Query: 309 LE 304
E
Sbjct: 329 SE 330
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 123 EPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSP 293
+P+ A+ P A P P+I P AP ++S A PV + F P
Sbjct: 455 KPAVSYDAYEEPPAEPAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEP 511
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 156 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 335
PV++ AAP A A P++ AAP ++ I+ PV +P AP AA+P
Sbjct: 100 PVVA-AAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA--APA-FAPAFAPAAVPA 155
Query: 336 AV 341
AV
Sbjct: 156 AV 157
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 310 SCTTLRFQLPSNIPIMSKT-MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS 459
S T+ +P++ P ++ + P+S+ S + ++ P+P+ TSP P +MS
Sbjct: 119 SSTSFHNSMPADFPTPEQSPVYPQSVCSMM-AQTPSPSYTSPYYPPPQMMS 168
>Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical
protein R01E6.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 231 AAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 410
A+P+ HSS+ +AS + QH H A EHS H AK E YS +D
Sbjct: 2 ASPISHSSHENASGKYGYGDESQHGKNFHQKA-----EHSGH-----EAK-EKGYS-QDG 49
Query: 411 HTGDHKSQHE 440
DH + H+
Sbjct: 50 KAADHDALHK 59
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 310 SCTTLRFQLPSNIPIMSKT-MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS 459
S T+ +P++ P ++ + P+S+ S + ++ P+P+ TSP P +MS
Sbjct: 86 SSTSFHNSMPADFPTPEQSPVYPQSVCSMM-AQTPSPSYTSPYYPPPQMMS 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,584
Number of Sequences: 27780
Number of extensions: 388792
Number of successful extensions: 1402
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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