Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0911
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 38 0.006
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 35 0.044
At5g31873.1 68418.m03777 hypothetical protein 30 1.2
At5g28120.1 68418.m03396 hypothetical protein 30 1.2
At5g28110.1 68418.m03395 hypothetical protein 30 1.2
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 30 1.2
At3g30816.1 68416.m03949 hypothetical protein 30 1.2
At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family ... 30 1.2
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 30 1.2
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.6
At5g41100.2 68418.m04997 expressed protein 29 2.9
At5g41100.1 68418.m04996 expressed protein 29 2.9
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 29 3.8
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati... 28 5.0
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 5.0
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 5.0
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 5.0
At1g13350.1 68414.m01550 protein kinase family protein contains ... 28 5.0
At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) simi... 28 5.0
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr... 27 8.8
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 8.8
At2g46570.1 68415.m05809 laccase family protein / diphenol oxida... 27 8.8
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +3
Query: 111 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHA-APVEH-SSYIHASPVVQH 284
VRH P +H +P +SH++P + ++P + H+ PVV A +PV+ SS +SP
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAASSPVKAVSSSTASSPRAAS 221
Query: 285 FSP 293
SP
Sbjct: 222 PSP 224
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +3
Query: 135 QATAHYTPVLSHAAPVLTHAAPLIQHAGP--VVHAAPV--EHSSYIHASPVVQHFS--PV 296
Q+TA+Y S P + H P ++H P V H+ P +H Y P V+H+S PV
Sbjct: 24 QSTANY--FYSSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPPVKHYSPPPV 81
Query: 297 QHAP 308
H+P
Sbjct: 82 YHSP 85
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 75 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 134
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 135 PPVYHSP 141
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 103 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 162
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 163 PPVYHSP 169
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 131 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 190
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 191 PPVYHSP 197
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 159 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 218
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 219 PPVYHSP 225
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 187 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 246
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 247 PPVYHSP 253
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 215 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 274
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 275 PPVYHSP 281
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 243 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 302
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 303 PPVYHSP 309
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 271 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 330
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 331 PPVYHSP 337
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 299 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 358
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 359 PPVYHSP 365
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
HY+P + H+ P V P ++H P V H+ P Y++ SP V+H+S
Sbjct: 327 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 386
Query: 291 -PVQHAP 308
PV H+P
Sbjct: 387 PPVYHSP 393
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = +3
Query: 198 PLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS--PVQHAP 308
P ++H P V H+ P Y++ SP V+H+S PV H+P
Sbjct: 71 PPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSP 113
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
+R DPR N+R R HGL +D V + G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
+R DPR N+R R HGL +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
+R DPR N+R R HGL +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 349 PIMSKTMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPS 501
PI S T P + S+ S +PA+TSP T P + A++ S P+
Sbjct: 24 PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPA 74
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
+R DPR N+R R HGL +D V + G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273
>At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family
protein contains Pfam PF02606: tetraacyldisaccharide-1-P
4'-kinase
Length = 395
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 573 VRQARSCVQ*R*IRCGGQLCIRPCGWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRN 394
V+ ARS V +RC LC+ G + A V+SI ++ H+ R+ D + +
Sbjct: 260 VKNARSHVALEALRCASVLCVSAIG-SADAFVKSIEMTGAHYVD-RLDFSDHHLFE-AED 316
Query: 393 MRTHTSREHGLRHDRNVR 340
+ T + R GL H N +
Sbjct: 317 VETMSRRAKGLEHKSNCK 334
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = -2
Query: 534 RCGGQLCIRPCGWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHT 379
RCG C R C H +S S G RV TC ++CG PR + R HT
Sbjct: 720 RCGMHACARTC---HPEPCDSFNESEA---GMRV-TCRQKCGAPRTDCR-HT 763
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 186 THAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIP 332
T P H+ P +P Y ++SP H SP H+P H+ P
Sbjct: 535 TRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPP 583
>At5g41100.2 68418.m04997 expressed protein
Length = 582
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Frame = +3
Query: 111 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFS 290
+R PS A TPV S ++P+ T H+ + H++P+E H +S
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYS 405
Query: 291 ----PVQHA------PVVHHAAIPIAVE 344
P +HA P +P+AV+
Sbjct: 406 RLPRPSEHAFSGPLKPSSTRLPVPVAVQ 433
>At5g41100.1 68418.m04996 expressed protein
Length = 586
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Frame = +3
Query: 111 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFS 290
+R PS A TPV S ++P+ T H+ + H++P+E H +S
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYS 405
Query: 291 ----PVQHA------PVVHHAAIPIAVE 344
P +HA P +P+AV+
Sbjct: 406 RLPRPSEHAFSGPLKPSSTRLPVPVAVQ 433
>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 495 NHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRNVRR--QLESQ 322
+H G+E I + +G D + R ++ SR+HG + VRR L+S
Sbjct: 108 DHSEGLEEISVMIPEENG---DDTDEEIEEERDGFVSNISRDHGESQQQRVRRSVSLDSL 164
Query: 321 RGARLEHVAQG 289
G R+ V G
Sbjct: 165 SGLRVSEVVVG 175
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +3
Query: 126 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAP-VEHSSYIHASPVVQHFSPVQH 302
P+ + PV S A H + + P ++ P +HSSY H S
Sbjct: 61 PNPNPPQYTRPVTSPATQQQQHLSQPLVRPPPQAYSRPWQQHSSYTHFSSASSPLLSSSS 120
Query: 303 APVVHHAAIPIAVEHSDHVEDHAPA 377
AP +++PI+ + + PA
Sbjct: 121 APASSSSSLPISGQQRGGMAIGVPA 145
>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
similar to GI:6688808 [Medicago sativa subsp. x varia],
caffeic acid O-methyltransferase (homt1), Populus
kitakamiensis, EMBL:PKHOMT1A
Length = 359
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 162 LSHAAPVLTHAAPLIQHAGPVVHAAPVE 245
LS+AA VL H + A P+VH A VE
Sbjct: 115 LSYAAYVLQHHQEALMRAWPLVHTAVVE 142
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 147 HYTP--VLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS----YIHASPVVQHFSPVQHAP 308
HY+P V P + H +P + P PV+H S Y P V+H+SP
Sbjct: 108 HYSPPPVYKSPPPPVKHYSPPPVYKSP---PPPVKHYSPPPVYKSPPPPVKHYSPPPSYT 164
Query: 309 VVHH 320
+HH
Sbjct: 165 TLHH 168
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 147 HYTP--VLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS----YIHASPVVQHFSPVQHAP 308
HY+P V P + H +P + P PV+H S Y P V+H+SP
Sbjct: 108 HYSPPPVYKSPPPPVKHYSPPPVYKSP---PPPVKHYSPPPVYKSPPPPVKHYSPPPSYT 164
Query: 309 VVHH 320
+HH
Sbjct: 165 TLHH 168
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 331 QLPSNIPIMSKTMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 447
Q P+ S+ P S S+ PS+ PTP + +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769
>At1g13350.1 68414.m01550 protein kinase family protein contains
protein kinase domain, Pfam:PF00069 (likely that this
cDNA contains a single unspliced intron. Putative intron
removed in this gene model.)
Length = 761
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -2
Query: 462 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRN 346
S H H D P+R+ H R HG RH R+
Sbjct: 9 SNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRD 47
>At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) similar
to Zn and Cd transporter ZNT1 [Thlaspi caerulescens]
gi|7381054|gb|AAF61374; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 408
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 501 GWNHQAGVESIRLSRHHHHGFRVGTCDRRC-GDPRRNMRTHTSREHGLRH 355
G H G+ + H H GTCD G +M ++ E+G RH
Sbjct: 203 GGIHIVGIRAHAAHHRHSHSNSHGTCDGHAHGHSHGHMHGNSDVENGARH 252
>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
protein
Length = 511
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 432 QHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNG 536
++E + +++K E +++ D ++ +VE DHH G
Sbjct: 424 KYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPG 458
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 529 WWSAVYSTLRMEPSGWSREYSPFTTSP 449
+++ +T M PS W++ YSP+ SP
Sbjct: 88 YYTDTTNTPSMSPSPWNQTYSPYYKSP 114
>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase
family protein similar to laccase [Populus balsamifera
subsp. trichocarpa][GI:3805960]
Length = 569
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 134 MRRLVMADYALGRHSMAVALVYNTTLANSQNRADYSNFE 18
M LV AD +GR+SMA+ + QN + +NF+
Sbjct: 273 MNILVTADQTVGRYSMAMGPYESAKNVKFQNTSAIANFQ 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,514
Number of Sequences: 28952
Number of extensions: 360034
Number of successful extensions: 1386
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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