SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0911
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    38   0.006
At1g21310.1 68414.m02662 proline-rich extensin-like family prote...    35   0.044
At5g31873.1 68418.m03777 hypothetical protein                          30   1.2  
At5g28120.1 68418.m03396 hypothetical protein                          30   1.2  
At5g28110.1 68418.m03395 hypothetical protein                          30   1.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    30   1.2  
At3g30816.1 68416.m03949 hypothetical protein                          30   1.2  
At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family ...    30   1.2  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    30   1.2  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   1.6  
At5g41100.2 68418.m04997 expressed protein                             29   2.9  
At5g41100.1 68418.m04996 expressed protein                             29   2.9  
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa...    29   3.8  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    29   3.8  
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati...    28   5.0  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    28   5.0  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    28   5.0  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   5.0  
At1g13350.1 68414.m01550 protein kinase family protein contains ...    28   5.0  
At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) simi...    28   5.0  
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr...    27   8.8  
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea...    27   8.8  
At2g46570.1 68415.m05809 laccase family protein / diphenol oxida...    27   8.8  

>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +3

Query: 111 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHA-APVEH-SSYIHASPVVQH 284
           VRH  P     +H +P +SH++P  + ++P + H+ PVV A +PV+  SS   +SP    
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAASSPVKAVSSSTASSPRAAS 221

Query: 285 FSP 293
            SP
Sbjct: 222 PSP 224


>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 431

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +3

Query: 135 QATAHYTPVLSHAAPVLTHAAPLIQHAGP--VVHAAPV--EHSSYIHASPVVQHFS--PV 296
           Q+TA+Y    S   P + H  P ++H  P  V H+ P   +H  Y    P V+H+S  PV
Sbjct: 24  QSTANY--FYSSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPPVKHYSPPPV 81

Query: 297 QHAP 308
            H+P
Sbjct: 82  YHSP 85



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 75  HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 134

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 135 PPVYHSP 141



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 103 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 162

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 163 PPVYHSP 169



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 131 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 190

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 191 PPVYHSP 197



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 159 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 218

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 219 PPVYHSP 225



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 187 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 246

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 247 PPVYHSP 253



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 215 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 274

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 275 PPVYHSP 281



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 243 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 302

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 303 PPVYHSP 309



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 271 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 330

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 331 PPVYHSP 337



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 299 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 358

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 359 PPVYHSP 365



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +3

Query: 147 HYTPV-LSHAAP------VLTHAAPLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS- 290
           HY+P  + H+ P      V     P ++H  P  V H+ P     Y++ SP   V+H+S 
Sbjct: 327 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 386

Query: 291 -PVQHAP 308
            PV H+P
Sbjct: 387 PPVYHSP 393



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +3

Query: 198 PLIQHAGP--VVHAAPVEHSSYIHASPV--VQHFS--PVQHAP 308
           P ++H  P  V H+ P     Y++ SP   V+H+S  PV H+P
Sbjct: 71  PPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSP 113


>At5g31873.1 68418.m03777 hypothetical protein 
          Length = 271

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
           +R  DPR N+R    R HGL +D  V    +   G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
           +R  DPR N+R    R HGL +D  V    +   G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
           +R  DPR N+R    R HGL +D  V    +   G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 349 PIMSKTMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPS 501
           PI S T  P + S+   S   +PA+TSP T P    +  A++   S   P+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPA 74


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 420 RRCGDPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG 289
           +R  DPR N+R    R HGL +D  V    +   G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273


>At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family
           protein contains Pfam PF02606: tetraacyldisaccharide-1-P
           4'-kinase
          Length = 395

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = -2

Query: 573 VRQARSCVQ*R*IRCGGQLCIRPCGWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRN 394
           V+ ARS V    +RC   LC+   G +  A V+SI ++  H+   R+   D    +   +
Sbjct: 260 VKNARSHVALEALRCASVLCVSAIG-SADAFVKSIEMTGAHYVD-RLDFSDHHLFE-AED 316

Query: 393 MRTHTSREHGLRHDRNVR 340
           + T + R  GL H  N +
Sbjct: 317 VETMSRRAKGLEHKSNCK 334


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = -2

Query: 534 RCGGQLCIRPCGWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHT 379
           RCG   C R C   H    +S   S     G RV TC ++CG PR + R HT
Sbjct: 720 RCGMHACARTC---HPEPCDSFNESEA---GMRV-TCRQKCGAPRTDCR-HT 763


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 186 THAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIP 332
           T   P   H+ P    +P     Y ++SP   H SP  H+P   H+  P
Sbjct: 535 TRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPP 583


>At5g41100.2 68418.m04997 expressed protein
          Length = 582

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
 Frame = +3

Query: 111 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFS 290
           +R   PS  A    TPV S ++P+ T       H+  + H++P+E     H       +S
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYS 405

Query: 291 ----PVQHA------PVVHHAAIPIAVE 344
               P +HA      P      +P+AV+
Sbjct: 406 RLPRPSEHAFSGPLKPSSTRLPVPVAVQ 433


>At5g41100.1 68418.m04996 expressed protein
          Length = 586

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
 Frame = +3

Query: 111 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFS 290
           +R   PS  A    TPV S ++P+ T       H+  + H++P+E     H       +S
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYS 405

Query: 291 ----PVQHA------PVVHHAAIPIAVE 344
               P +HA      P      +P+AV+
Sbjct: 406 RLPRPSEHAFSGPLKPSSTRLPVPVAVQ 433


>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 495 NHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRNVRR--QLESQ 322
           +H  G+E I +     +G      D    + R    ++ SR+HG    + VRR   L+S 
Sbjct: 108 DHSEGLEEISVMIPEENG---DDTDEEIEEERDGFVSNISRDHGESQQQRVRRSVSLDSL 164

Query: 321 RGARLEHVAQG 289
            G R+  V  G
Sbjct: 165 SGLRVSEVVVG 175


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +3

Query: 126 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAP-VEHSSYIHASPVVQHFSPVQH 302
           P+     +  PV S A     H +  +    P  ++ P  +HSSY H S           
Sbjct: 61  PNPNPPQYTRPVTSPATQQQQHLSQPLVRPPPQAYSRPWQQHSSYTHFSSASSPLLSSSS 120

Query: 303 APVVHHAAIPIAVEHSDHVEDHAPA 377
           AP    +++PI+ +    +    PA
Sbjct: 121 APASSSSSLPISGQQRGGMAIGVPA 145


>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
           similar to GI:6688808 [Medicago sativa subsp. x varia],
           caffeic acid O-methyltransferase (homt1), Populus
           kitakamiensis, EMBL:PKHOMT1A
          Length = 359

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 LSHAAPVLTHAAPLIQHAGPVVHAAPVE 245
           LS+AA VL H    +  A P+VH A VE
Sbjct: 115 LSYAAYVLQHHQEALMRAWPLVHTAVVE 142


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +3

Query: 147 HYTP--VLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS----YIHASPVVQHFSPVQHAP 308
           HY+P  V     P + H +P   +  P     PV+H S    Y    P V+H+SP     
Sbjct: 108 HYSPPPVYKSPPPPVKHYSPPPVYKSP---PPPVKHYSPPPVYKSPPPPVKHYSPPPSYT 164

Query: 309 VVHH 320
            +HH
Sbjct: 165 TLHH 168


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +3

Query: 147 HYTP--VLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS----YIHASPVVQHFSPVQHAP 308
           HY+P  V     P + H +P   +  P     PV+H S    Y    P V+H+SP     
Sbjct: 108 HYSPPPVYKSPPPPVKHYSPPPVYKSP---PPPVKHYSPPPVYKSPPPPVKHYSPPPSYT 164

Query: 309 VVHH 320
            +HH
Sbjct: 165 TLHH 168


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 331 QLPSNIPIMSKTMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 447
           Q P+     S+   P S S+  PS+ PTP +      +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769


>At1g13350.1 68414.m01550 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069 (likely that this
           cDNA contains a single unspliced intron. Putative intron
           removed in this gene model.)
          Length = 761

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 462 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHGLRHDRN 346
           S H  H       D     P+R+   H  R HG RH R+
Sbjct: 9   SNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRD 47


>At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) similar
           to Zn and Cd transporter ZNT1 [Thlaspi caerulescens]
           gi|7381054|gb|AAF61374; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 408

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -2

Query: 501 GWNHQAGVESIRLSRHHHHGFRVGTCDRRC-GDPRRNMRTHTSREHGLRH 355
           G  H  G+ +      H H    GTCD    G    +M  ++  E+G RH
Sbjct: 203 GGIHIVGIRAHAAHHRHSHSNSHGTCDGHAHGHSHGHMHGNSDVENGARH 252


>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
           protein
          Length = 511

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 432 QHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNG 536
           ++E +  +++K E  +++ D ++ +VE   DHH G
Sbjct: 424 KYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPG 458


>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein GI:2739374
           from [Arabidopsis thaliana]; no characterized homologs
          Length = 473

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 529 WWSAVYSTLRMEPSGWSREYSPFTTSP 449
           +++   +T  M PS W++ YSP+  SP
Sbjct: 88  YYTDTTNTPSMSPSPWNQTYSPYYKSP 114


>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase
           family protein similar to laccase [Populus balsamifera
           subsp. trichocarpa][GI:3805960]
          Length = 569

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 134 MRRLVMADYALGRHSMAVALVYNTTLANSQNRADYSNFE 18
           M  LV AD  +GR+SMA+    +      QN +  +NF+
Sbjct: 273 MNILVTADQTVGRYSMAMGPYESAKNVKFQNTSAIANFQ 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,514
Number of Sequences: 28952
Number of extensions: 360034
Number of successful extensions: 1386
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -