Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0910
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    30   0.20 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    30   0.20 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    30   0.20 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    30   0.20 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.3  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   3.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   5.7  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   5.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    24   9.9  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 299 QSNEIVNIPNSLFLFLYDIVFLNCCN 376
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 299 QSNEIVNIPNSLFLFLYDIVFLNCCN 376
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 299 QSNEIVNIPNSLFLFLYDIVFLNCCN 376
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 299 QSNEIVNIPNSLFLFLYDIVFLNCCN 376
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 323 PNSLFLFLYDIVFLNCCNNSINK*HVFV 406
           PN+L LF    + L  CN+SI    +FV
Sbjct: 182 PNALLLFFPSYLILRKCNSSIKFRQIFV 209


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 419 FFFFLQKHVIY*LNYYSNLKIQCRIKTKTSY*VY 318
           FF+ LQ + +Y  NY+  LK +     K  + VY
Sbjct: 821 FFYVLQTNEMYLANYFQALKTEGTSSVKIRHAVY 854


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 462 LTIGRIGYRAPPRVFFFFFTKTCYLLIELLQQFKNTM 352
           L +  IG +       F FTKTC +   L+Q  KN M
Sbjct: 245 LVVHGIGQKRSETEERFLFTKTCNVFRSLIQIQKNIM 281


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 405 TKTCYLLIELLQQFKN-TMSYKNKNKLLGI 319
           T  CY ++EL+Q+F   T S     KLL I
Sbjct: 285 TDLCYTIVELMQEFSTITSSPLLDQKLLSI 314


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 96  GHVMF*QGGLETVHLELFRLH*AGFGEP 13
           GH M    G  TV L+L ++H  GF +P
Sbjct: 268 GHKMVMSIGGSTVDLDLVQIHPTGFVDP 295


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 423 VFFFFFTKTCYLLIELLQQFKNTMSYKN 340
           V  FF   TC+L +E L     T  Y N
Sbjct: 545 VHSFFAEATCHLFLEKLPTITKTYVYSN 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,810
Number of Sequences: 5004
Number of extensions: 33365
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)