Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0910
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   2.2  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   2.2  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   5.0  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   5.0  
Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   6.6  

>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 293 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 388
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 293 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 388
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 456 IGRIGYRAPPRVFFFFF 406
           IG  G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 456 IGRIGYRAPPRVFFFFF 406
           IG  G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362


>Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical
           protein T21B4.5 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 420 FFFFFTKTCYLLIELLQQFKNTMSYKNKNKL 328
           F+ FF  +  ++I ++ QF+N  S   KNK+
Sbjct: 111 FYMFFALSSLIMISIVLQFENRSSLILKNKV 141


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 13  WLTKSGLVKPEQLKV 57
           W+ K+GL KPEQ+K+
Sbjct: 214 WVVKTGLFKPEQMKL 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,083
Number of Sequences: 27780
Number of extensions: 196668
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)