Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0910
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54760.1 68418.m06820 eukaryotic translation initiation facto...    30   0.89 
At4g27130.1 68417.m03899 eukaryotic translation initiation facto...    30   0.89 
At1g54290.1 68414.m06189 eukaryotic translation initiation facto...    30   0.89 
At5g54940.2 68418.m06843 eukaryotic translation initiation facto...    29   1.2  
At5g54940.1 68418.m06842 eukaryotic translation initiation facto...    29   1.2  
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa...    27   4.7  
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co...    27   6.2  

>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 1   NICQWLTKSGLVKPEQLKVHGF 66
           N+  +L ++GLVK + +K+HGF
Sbjct: 92  NVSTFLVQAGLVKKDNIKIHGF 113


>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 1   NICQWLTKSGLVKPEQLKVHGF 66
           N+  +L ++GLVK + +K+HGF
Sbjct: 92  NVSTFLVQAGLVKKDNIKIHGF 113


>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
           SUI1, putative similar to P|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 1   NICQWLTKSGLVKPEQLKVHGF 66
           N+  +L ++GLVK + +K+HGF
Sbjct: 92  NVSTFLVQAGLVKKDNIKIHGF 113


>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 4   ICQWLTKSGLVKPEQLKVHGF 66
           + Q+L ++G+ K +Q+K+HGF
Sbjct: 92  VSQFLVQTGIAKKDQIKIHGF 112


>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 4   ICQWLTKSGLVKPEQLKVHGF 66
           + Q+L ++G+ K +Q+K+HGF
Sbjct: 92  VSQFLVQTGIAKKDQIKIHGF 112


>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 343

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 213 VPCDFLCCIKYCKSYILSPP 272
           VPC  +CC   C S++ S P
Sbjct: 309 VPCGHMCCCTACSSHLTSCP 328


>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 130 CNYKSY*KYVFREHRRLQRKENTVVRALCLATSSVV*NIVNLI 258
           C YK   + VF+ H +++R+E   V +   A +S +  I+ L+
Sbjct: 468 CEYKDTLEQVFKSHSKMEREEEEPVESGNSAFASQLMRIMELL 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,382,496
Number of Sequences: 28952
Number of extensions: 167805
Number of successful extensions: 301
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)