BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0910 (466 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 30 0.89 At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 30 0.89 At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 30 0.89 At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 29 1.2 At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 29 1.2 At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 27 4.7 At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 27 6.2 >At5g54760.1 68418.m06820 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 Length = 113 Score = 29.9 bits (64), Expect = 0.89 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +1 Query: 1 NICQWLTKSGLVKPEQLKVHGF 66 N+ +L ++GLVK + +K+HGF Sbjct: 92 NVSTFLVQAGLVKKDNIKIHGF 113 >At4g27130.1 68417.m03899 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 Length = 113 Score = 29.9 bits (64), Expect = 0.89 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +1 Query: 1 NICQWLTKSGLVKPEQLKVHGF 66 N+ +L ++GLVK + +K+HGF Sbjct: 92 NVSTFLVQAGLVKKDNIKIHGF 113 >At1g54290.1 68414.m06189 eukaryotic translation initiation factor SUI1, putative similar to P|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 Length = 113 Score = 29.9 bits (64), Expect = 0.89 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +1 Query: 1 NICQWLTKSGLVKPEQLKVHGF 66 N+ +L ++GLVK + +K+HGF Sbjct: 92 NVSTFLVQAGLVKKDNIKIHGF 113 >At5g54940.2 68418.m06843 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 Length = 112 Score = 29.5 bits (63), Expect = 1.2 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +1 Query: 4 ICQWLTKSGLVKPEQLKVHGF 66 + Q+L ++G+ K +Q+K+HGF Sbjct: 92 VSQFLVQTGIAKKDQIKIHGF 112 >At5g54940.1 68418.m06842 eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 Length = 112 Score = 29.5 bits (63), Expect = 1.2 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +1 Query: 4 ICQWLTKSGLVKPEQLKVHGF 66 + Q+L ++G+ K +Q+K+HGF Sbjct: 92 VSQFLVQTGIAKKDQIKIHGF 112 >At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 343 Score = 27.5 bits (58), Expect = 4.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +3 Query: 213 VPCDFLCCIKYCKSYILSPP 272 VPC +CC C S++ S P Sbjct: 309 VPCGHMCCCTACSSHLTSCP 328 >At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; Length = 695 Score = 27.1 bits (57), Expect = 6.2 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 130 CNYKSY*KYVFREHRRLQRKENTVVRALCLATSSVV*NIVNLI 258 C YK + VF+ H +++R+E V + A +S + I+ L+ Sbjct: 468 CEYKDTLEQVFKSHSKMEREEEEPVESGNSAFASQLMRIMELL 510 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,382,496 Number of Sequences: 28952 Number of extensions: 167805 Number of successful extensions: 301 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 296 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 301 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 782033640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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