Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0909
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    29   0.51 
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.4  

>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -2

Query: 419 GLSLVQYISPDCFVQGFLLLVPDTLNICA*TENYIIISI-GFGNHSKLN-TPLAKFPING 246
           GL LV +++P          + DT +  A  E+++  S  GF      N  P   FP++ 
Sbjct: 8   GLLLVAHLAPSSAFNPLRFFLDDTFSSGATEEHFMGPSDDGFALQQPTNYDPSMPFPLDE 67

Query: 245 KGDSKEP*LQNVFIFIFKDSVAKILLLIGNSHHNKQEY 132
              +    + N +I +FK SV K  L     HH   E+
Sbjct: 68  SASAAVDAVSNNYIVMFKPSVDKSKL---EQHHRWIEH 102


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 562 ICSSRVCSLT*FPNYLLNS*HHLKYSERRENWS 660
           ICS+ V SLT  PN L ++  H K  ++ ++ S
Sbjct: 164 ICSNLVSSLTKAPNVLKSNSSHFKKEKKSKHSS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,518
Number of Sequences: 5004
Number of extensions: 51467
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)