Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0909
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423...    29   3.8  
06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925     28   6.6  
06_03_0393 - 20328268-20328363,20328637-20329158,20329236-203294...    28   8.7  
04_03_0111 - 11361954-11363510                                         28   8.7  

>04_03_0542 +
           16940464-16940527,16941906-16942101,16942204-16942365,
           16942721-16942802,16942873-16943139,16943285-16943416
          Length = 300

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 212 VFIFIFKDSVAKILLLIGNSHHNKQEYFFISTNVTDAHRNNNKSCICSDSMF 57
           +F  I  D V   ++   NSH NKQ    +  +VT AH+N  +  +  +SM+
Sbjct: 165 IFDLIPGDMVISAMMAAINSHWNKQAQ--VIYHVTSAHQNPIQLSLIEESMY 214


>06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925
          Length = 327

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 431 QPRVGLSLVQYISPDCFVQG--FLLLVPDTL 345
           +PR+G S+++    DCFV G    +L+ DTL
Sbjct: 61  EPRMGASIIRLFFHDCFVNGCDASILLDDTL 91


>06_03_0393 -
           20328268-20328363,20328637-20329158,20329236-20329427,
           20329533-20329745
          Length = 340

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 431 QPRVGLSLVQYISPDCFVQG--FLLLVPDTLN 342
           +PR+G S+++    DCFV G    +L+ DT N
Sbjct: 53  EPRMGASILRMFFHDCFVNGCDASILLDDTAN 84


>04_03_0111 - 11361954-11363510
          Length = 518

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 247 PLIGNLANGVFSFEWLPK 300
           P  GN ANG FS EWLP+
Sbjct: 327 PPAGNDANGEFSPEWLPE 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,906
Number of Sequences: 37544
Number of extensions: 291632
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)