Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0909
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19420.1 68418.m02314 zinc finger protein, putative / regulat...    31   1.0  
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat...    31   1.0  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    28   5.5  
At5g52790.1 68418.m06551 CBS domain-containing protein-related c...    28   7.3  
At5g58390.1 68418.m07312 peroxidase, putative similar to peroxid...    27   9.6  
At3g43450.1 68416.m04606 hypothetical protein                          27   9.6  

>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1124

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 108 CHVCTDKEILLLIMMRIPNK*KNLCNRVFENKNENILE 221
           CH C++K+ L   M   PNK   +C+R F NK +  +E
Sbjct: 709 CHSCSNKKSLKACMAPNPNKPYRVCDRCF-NKLKKAME 745


>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1062

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 108 CHVCTDKEILLLIMMRIPNK*KNLCNRVFENKNENILE 221
           CH CT K+ L   M   PNK   +C++ F NK +  +E
Sbjct: 673 CHSCTSKKSLKACMAPNPNKPYRVCDKCF-NKLKKTME 709


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 326 PFKHKCLRCQELEGESPEQSSLER 397
           P K  C RC EL  + P+QS  ER
Sbjct: 642 PSKFLCFRCIELYSKKPKQSKKER 665


>At5g52790.1 68418.m06551 CBS domain-containing protein-related
           contains Pfam profile PF01595: Domain of unknown
           function, weak hit to PF00571: CBS domain
          Length = 500

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 353 DTLNICA*TENYIIISIGFGNHSKLNTPLAKFPING 246
           D LNI     +++   +G  NH+  NTP+ +  ING
Sbjct: 291 DILNIFQTGRSHMAAVVGTKNHTNTNTPVHEKSING 326


>At5g58390.1 68418.m07312 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306
          Length = 316

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 431 QPRVGLSLVQYISPDCFVQGF--LLLVPDT 348
           +PR+G SL++    DCFV G    LL+ DT
Sbjct: 48  EPRMGASLLRLFFHDCFVNGCDGSLLLDDT 77


>At3g43450.1 68416.m04606 hypothetical protein
          Length = 222

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 219 PECFHFYFQRLCCKDSFTYW 160
           PEC  +++ R+ C D + +W
Sbjct: 199 PECAQWHYYRISCDDYYLFW 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,565,345
Number of Sequences: 28952
Number of extensions: 255769
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)