BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0909 (729 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 31 1.0 At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 31 1.0 At1g33420.1 68414.m04137 PHD finger family protein contains Pfam... 28 5.5 At5g52790.1 68418.m06551 CBS domain-containing protein-related c... 28 7.3 At5g58390.1 68418.m07312 peroxidase, putative similar to peroxid... 27 9.6 At3g43450.1 68416.m04606 hypothetical protein 27 9.6 >At5g19420.1 68418.m02314 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein similar to zinc finger protein [Arabidopsis thaliana] gi|15811367|gb|AAL08940 Length = 1124 Score = 30.7 bits (66), Expect = 1.0 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +3 Query: 108 CHVCTDKEILLLIMMRIPNK*KNLCNRVFENKNENILE 221 CH C++K+ L M PNK +C+R F NK + +E Sbjct: 709 CHSCSNKKSLKACMAPNPNKPYRVCDRCF-NKLKKAME 745 >At5g12350.1 68418.m01453 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein similar to zinc finger protein [Arabidopsis thaliana] gi|15811367|gb|AAL08940 Length = 1062 Score = 30.7 bits (66), Expect = 1.0 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 108 CHVCTDKEILLLIMMRIPNK*KNLCNRVFENKNENILE 221 CH CT K+ L M PNK +C++ F NK + +E Sbjct: 673 CHSCTSKKSLKACMAPNPNKPYRVCDKCF-NKLKKTME 709 >At1g33420.1 68414.m04137 PHD finger family protein contains Pfam profile: PF00628: PHD-finger Length = 697 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 326 PFKHKCLRCQELEGESPEQSSLER 397 P K C RC EL + P+QS ER Sbjct: 642 PSKFLCFRCIELYSKKPKQSKKER 665 >At5g52790.1 68418.m06551 CBS domain-containing protein-related contains Pfam profile PF01595: Domain of unknown function, weak hit to PF00571: CBS domain Length = 500 Score = 27.9 bits (59), Expect = 7.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 353 DTLNICA*TENYIIISIGFGNHSKLNTPLAKFPING 246 D LNI +++ +G NH+ NTP+ + ING Sbjct: 291 DILNIFQTGRSHMAAVVGTKNHTNTNTPVHEKSING 326 >At5g58390.1 68418.m07312 peroxidase, putative similar to peroxidase [Nicotiana tabacum] gi|5381253|dbj|BAA82306 Length = 316 Score = 27.5 bits (58), Expect = 9.6 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -2 Query: 431 QPRVGLSLVQYISPDCFVQGF--LLLVPDT 348 +PR+G SL++ DCFV G LL+ DT Sbjct: 48 EPRMGASLLRLFFHDCFVNGCDGSLLLDDT 77 >At3g43450.1 68416.m04606 hypothetical protein Length = 222 Score = 27.5 bits (58), Expect = 9.6 Identities = 7/20 (35%), Positives = 13/20 (65%) Frame = -1 Query: 219 PECFHFYFQRLCCKDSFTYW 160 PEC +++ R+ C D + +W Sbjct: 199 PECAQWHYYRISCDDYYLFW 218 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,565,345 Number of Sequences: 28952 Number of extensions: 255769 Number of successful extensions: 460 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 450 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 460 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1594686376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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