Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0905
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   1.9  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   3.3  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   3.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   5.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   7.6  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   10.0 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   10.0 

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -1

Query: 363 PSSIVSYTWCHSWE*SNVNKTPLD*NTI*IKFTEIRNNFLCLIIVFLLNYTTSEFVCAIR 184
           P S+V+    HSW  S           + IK  E+   FLC +   L+N+ T     AI 
Sbjct: 456 PLSLVTDFLLHSWPKSAERLHTSQSPFVRIKTAEVFYEFLCFLRPSLINFDTILRKSAIT 515

Query: 183 NLFIL 169
           +  +L
Sbjct: 516 SFSVL 520


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 20  YPVTHHYYYR*CFDRQYTNLLK 85
           Y +TH+Y  R  F+R+Y +L++
Sbjct: 294 YKLTHYYGNRISFEREYFDLIR 315


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 246 LCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVF 121
           L +++ FL+NYT      +  + F L   Y I+ +L  L  F
Sbjct: 18  LPIVVSFLINYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAF 59


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 276 IKFTEIRNNFLCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRW 97
           I  +E R   +  ++  LL+    E VCA RN   +Q G     K  LLL    S L +W
Sbjct: 315 IGISESRQEDVFCLLAALLHLGNIE-VCATRNEAQIQPGDGYLQKAALLLGVDSSTLAKW 373


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 104 LDGSQVFSTNWCTAYQNISDSNNGA*PGSTSYT 6
           L G  +F + W  AY+ ISD+ + A   S+SYT
Sbjct: 622 LMGYLLFCSGWI-AYRAISDAIHNASSTSSSYT 653


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 252 NFLCLIIVFLLNYTTSEFV 196
           N +C++I   ++YT  EFV
Sbjct: 357 NIVCMVIHITIHYTGKEFV 375


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 285 YSNLKEFC*HWIIPMSDTKCN*LYSRGGP 371
           Y  +   C HW +P+ DTK   L  +  P
Sbjct: 484 YDTVTGLC-HWHMPLGDTKVTSLSFKSSP 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,033
Number of Sequences: 5004
Number of extensions: 29950
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)