BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0905 (399 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32) 28 3.2 SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 28 3.2 SB_15172| Best HMM Match : EGF_CA (HMM E-Value=2.3) 28 3.2 >SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32) Length = 524 Score = 27.9 bits (59), Expect = 3.2 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = -1 Query: 261 IRNNFLCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPSIF 82 IR FL ++++F L Y + + + N ++ L LL F+Y+ L+ W P+ Sbjct: 390 IRMAFL-IMVLFALCYLPYQVLYLLMNFDVMAT-----LSYGFLL-FKYAHLLTWVPNAL 442 Query: 81 NKLVY 67 N +VY Sbjct: 443 NPIVY 447 >SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) Length = 1514 Score = 27.9 bits (59), Expect = 3.2 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 117 YSALIRWQPSIFNKLVYCL 61 Y ++RWQP+++N CL Sbjct: 426 YDKMVRWQPNVYNDSFECL 444 >SB_15172| Best HMM Match : EGF_CA (HMM E-Value=2.3) Length = 161 Score = 27.9 bits (59), Expect = 3.2 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 117 YSALIRWQPSIFNKLVYCL 61 Y ++RWQP+++N CL Sbjct: 91 YDKMVRWQPNVYNDSFECL 109 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,804,914 Number of Sequences: 59808 Number of extensions: 212548 Number of successful extensions: 315 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 315 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 703143849 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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