Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0905
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)                   28   3.2  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 28   3.2  
SB_15172| Best HMM Match : EGF_CA (HMM E-Value=2.3)                    28   3.2  

>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
          Length = 524

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 261 IRNNFLCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPSIF 82
           IR  FL ++++F L Y   + +  + N  ++       L    LL F+Y+ L+ W P+  
Sbjct: 390 IRMAFL-IMVLFALCYLPYQVLYLLMNFDVMAT-----LSYGFLL-FKYAHLLTWVPNAL 442

Query: 81  NKLVY 67
           N +VY
Sbjct: 443 NPIVY 447


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 117 YSALIRWQPSIFNKLVYCL 61
           Y  ++RWQP+++N    CL
Sbjct: 426 YDKMVRWQPNVYNDSFECL 444


>SB_15172| Best HMM Match : EGF_CA (HMM E-Value=2.3)
          Length = 161

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 117 YSALIRWQPSIFNKLVYCL 61
           Y  ++RWQP+++N    CL
Sbjct: 91  YDKMVRWQPNVYNDSFECL 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,804,914
Number of Sequences: 59808
Number of extensions: 212548
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)