Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0901
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   282   3e-77
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    28   0.82 
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    27   1.4  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    27   1.9  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   2.5  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  282 bits (691), Expect = 3e-77
 Identities = 127/184 (69%), Positives = 150/184 (81%), Gaps = 2/184 (1%)
 Frame = +2

Query: 2   KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
           KCATITPDE RV+E+ LKKMW SPNGTIRNIL GTVFREPIL ++IP+ +PGWT PI IG
Sbjct: 82  KCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIG 141

Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRV--LYDFKTPGVAMGMYNTDESIRS 355
           RHA GDQYK+ D V   PGK+EL +T +   + +    +Y+F   GVAM MYNTD+SIR 
Sbjct: 142 RHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRG 201

Query: 356 FAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLI 535
           FAHSSFQ+ALQKK PLYLSTKNTILK+YDGRFKD F+EV++SDYK KF+E  +WY+HRLI
Sbjct: 202 FAHSSFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLI 261

Query: 536 DDMV 547
           DDMV
Sbjct: 262 DDMV 265


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 413 TKNTILKRYDGRFKDIFEEVFQSDYKTKFD 502
           T+ T+L   DG+FKDIF++    D + +++
Sbjct: 414 TQETLLGLLDGKFKDIFDKCIIIDCRFEYE 443


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 388 EKMASIPVYEEYHFETLRWSFQ 453
           ++M  +P +E+YHF+TL   FQ
Sbjct: 156 QQMNLMPTFEKYHFKTLNKLFQ 177


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +2

Query: 218 FVVPKPGKVELVYTTRDGTTERRVLYD-FKTPGVAM----GMYNTDESIRSFAHSSFQVA 382
           F++ + G+V +   T      RR+LYD FK  G  +     + N ++ I +    +  V+
Sbjct: 130 FLLKEKGQVAIYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVS 189

Query: 383 LQ-KKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDY 487
            + + W L ++ K    +R D   K  +E + + DY
Sbjct: 190 EEFRNWDLEMAEKE-YCRRID-ILKCHYETIDEKDY 223


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 384 KAT*KLEWAKDRIDSSVLYMPIATPGVLKSYNTR 283
           KAT K EW K++ID   L   I T   LK+Y  R
Sbjct: 300 KATEKREWVKEKIDLESLLGTIQTN--LKTYQLR 331


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 383 LQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKI 514
           + K W LY   +  +    + +F+ +   VF+SDY    D++ I
Sbjct: 97  MNKLWNLYQKHREAVAHLKENQFQPLSLGVFRSDYMVHQDDSFI 140


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 117 NRYCVRVSRGL--CLVGRNLL**AVMRTATNTRRKILLYRNPERLNLFTLHEMVRQ 278
           N  C+ +  G   C V RNLL   V R  T      + Y NP R +LFT  +  R+
Sbjct: 335 NSKCLLLGAGTLGCGVARNLLSWGV-RHVTFVDYSTVSYSNPVRQSLFTFEDCKRK 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,765
Number of Sequences: 5004
Number of extensions: 55268
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)