Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0901
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 279 8e-76
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 274 3e-74
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 233 9e-62
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 144 4e-53
10_01_0316 + 3479574-3482679,3482766-3483127 29 1.9
10_01_0318 + 3493913-3496976,3497064-3497392 29 3.4
10_03_0002 - 6858257-6861205 28 5.9
05_01_0340 - 2677082-2678266 27 7.7
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 279 bits (685), Expect = 8e-76
Identities = 127/182 (69%), Positives = 147/182 (80%)
Frame = +2
Query: 2 KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
KCATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C++IPR+VPGWTKPI IG
Sbjct: 74 KCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIG 133
Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFA 361
RHA GDQY+A D V+ PGK++LVY +D E V GVA MYNTDESIRSFA
Sbjct: 134 RHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYNTDESIRSFA 193
Query: 362 HSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDD 541
+S A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K+KF+ A IWYEHRLIDD
Sbjct: 194 EASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDD 253
Query: 542 MV 547
MV
Sbjct: 254 MV 255
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 274 bits (672), Expect = 3e-74
Identities = 122/182 (67%), Positives = 149/182 (81%)
Frame = +2
Query: 2 KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
KCATITPDE RV+EF LK+MW SPNGTIRNI+ GTVFREPI+C+++PR+VPGWTKPI IG
Sbjct: 74 KCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLVPGWTKPICIG 133
Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFA 361
RHA GDQY+A D V+ PGK++LV+ +D + V GVA+ MYNTDESIR+FA
Sbjct: 134 RHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMYNTDESIRAFA 193
Query: 362 HSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDD 541
+S A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K+KF+ A IWYEHRLIDD
Sbjct: 194 EASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKFEAAGIWYEHRLIDD 253
Query: 542 MV 547
MV
Sbjct: 254 MV 255
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 233 bits (569), Expect = 9e-62
Identities = 114/193 (59%), Positives = 138/193 (71%), Gaps = 18/193 (9%)
Frame = +2
Query: 23 DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQ 202
DE RV+EF L MW SPNGTIRNIL GTVFREPI+C++IPR+VPGW KPI IGRHA GDQ
Sbjct: 124 DEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWIKPICIGRHAFGDQ 183
Query: 203 YKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQVA 382
Y+A D V+ PGK++LV+ R+ E V GVA+ MYNTDESI +FA +S +A
Sbjct: 184 YRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVALSMYNTDESIWAFAEASMNMA 243
Query: 383 LQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIW--------------- 517
QK+WPLYLSTKNTILK+YDGRFKDIF+E +++ ++ KFD+A IW
Sbjct: 244 YQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFDDAGIWNMEPYFPPLCPNHFC 303
Query: 518 ---YEHRLIDDMV 547
YEHRLIDDMV
Sbjct: 304 CGRYEHRLIDDMV 316
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 144 bits (350), Expect(2) = 4e-53
Identities = 63/86 (73%), Positives = 74/86 (86%)
Frame = +2
Query: 290 LYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEE 469
+Y+FK PGVA+ MYN DESIR+FA SS +AL KKWPLYLSTKNTILK+YDGRFKDIF+E
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQE 263
Query: 470 VFQSDYKTKFDEAKIWYEHRLIDDMV 547
V++ +K KF+E IWYEHRLIDDMV
Sbjct: 264 VYEEKWKEKFEENSIWYEHRLIDDMV 289
Score = 81.4 bits (192), Expect(2) = 4e-53
Identities = 38/56 (67%), Positives = 46/56 (82%), Gaps = 2/56 (3%)
Frame = +2
Query: 11 TITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRV--VPGWTKPI 172
T+T DE RV+EFKLK MW SPNGTIRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 146 TLT-DETRVKEFKLKSMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 80 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 214
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 842 SMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRTE 886
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 80 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 214
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 828 SVRNMDSTEELPEELTYEDILRGTDNWSEKYVIGRGRHGTVYRTE 872
>10_03_0002 - 6858257-6861205
Length = 982
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 200 QYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQV 379
++ + DFV GK+ L+ + D + E R+ F P A + T SI ++ S ++
Sbjct: 19 RFGSLDFVTNNFGKISLLDSESDQSGENRISVPFGLPNAAESYFKT-ISIEFASNHSGEI 77
Query: 380 ALQKKWP 400
A P
Sbjct: 78 ASSPTTP 84
>05_01_0340 - 2677082-2678266
Length = 394
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 231 NPERLNLFTLHEMVRQRGVYYMILKLRALLWACTIPTNRFGPLPIP 368
+P RLNL ++ G Y L+ A + A TN F L +P
Sbjct: 209 HPHRLNLAAASRAMQANGSLYWTLEGGASVVALNTATNEFSVLELP 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,147,156
Number of Sequences: 37544
Number of extensions: 349559
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -