Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0901
(562 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 276 1e-74
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 232 2e-61
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13) 33 0.21
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 31 0.85
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 28 6.0
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 28 6.0
SB_6680| Best HMM Match : Astacin (HMM E-Value=0) 28 6.0
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9) 27 7.9
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 276 bits (676), Expect = 1e-74
Identities = 123/183 (67%), Positives = 149/183 (81%), Gaps = 1/183 (0%)
Frame = +2
Query: 2 KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
KCATITPDE RVEEFKLKKMW SPNGTIRNILGGTVFR PI+C+++PR+VPGW KPIVIG
Sbjct: 62 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIG 121
Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFK-TPGVAMGMYNTDESIRSF 358
RHA GDQY+A+DF V PG E+ +T G +++F T GV MGMYNTDE+IR F
Sbjct: 122 RHAFGDQYRARDFAVNGPGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDF 181
Query: 359 AHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
AHS Q A+ K+ PLY+STKNTILK+YDGRFKDIF+++++ +Y+++F E IWYEHRLID
Sbjct: 182 AHSCMQYAIHKQVPLYMSTKNTILKKYDGRFKDIFQDIYEREYESQFKELGIWYEHRLID 241
Query: 539 DMV 547
DMV
Sbjct: 242 DMV 244
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 232 bits (567), Expect = 2e-61
Identities = 117/184 (63%), Positives = 136/184 (73%), Gaps = 2/184 (1%)
Frame = +2
Query: 2 KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
KCATITPDE+RVEEFKLKKMW SPNGTIRNILGGTVFRE I+C++IPR+V WTKPI+IG
Sbjct: 36 KCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVSPWTKPIIIG 95
Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTE-RRVLYDFKT-PGVAMGMYNTDESIRS 355
RHAH DQYKA DFVVP PGKVE+VY+ DG + + +FK GV MGM+NTD SIR+
Sbjct: 96 RHAHADQYKATDFVVPGPGKVEIVYSPADGGEPIKYTVNEFKDGGGVTMGMFNTDVSIRA 155
Query: 356 FAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLI 535
FAHSSFQ AL KK+PLY+ +YK+KF+E+ IWYEHRLI
Sbjct: 156 FAHSSFQYALDKKYPLYM-----------------------REYKSKFEESNIWYEHRLI 192
Query: 536 DDMV 547
DDMV
Sbjct: 193 DDMV 196
>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
Length = 302
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 374 QVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
Q+ L+ K L K TI + G + ++S YKT+ E ++W + +D
Sbjct: 167 QLLLEPKQGLVKGQKFTIKLEFSGELSNKMAGFYKSSYKTRNGEVRVWAQKEALD 221
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 203 YKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQ 376
YKA+D +PK L TR+G + R Y + P G +N + I S F+
Sbjct: 95 YKAEDCSIPKREAPVLYGVTREGLCDLRYYYCKRFPLTGKGFFNNRKLICSVRQILFR 152
>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 201 NTRRKILLYRNPERLNLFTLHEMVRQRGVYYMI 299
N R+ LL + N+ L+E ++QRGVY ++
Sbjct: 60 NILREALLLKRAHHPNIVKLYETLKQRGVYCLV 92
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 23 DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQ 202
D + +E++KL+K GTI N G + E +L ++P + + ++AH +
Sbjct: 295 DPKELEDYKLEK------GTITNYPGAKMVEENLLEAECDILIPAANEKQITKKNAHRIK 348
Query: 203 YKAQDFVVPKPG 238
K + + PG
Sbjct: 349 AKEKGTITNYPG 360
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 165 FVQPGTTLGIL*HNIGSRNTVPP-KMLRIVPFGLSHIFFNLNSS 37
F P T L + +NIGS NT+ ++ R VP G+ H + +N++
Sbjct: 38 FCHPATCLTVFRYNIGSLNTLKQLRIWREVPSGV-HKRYEMNAT 80
>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
Length = 637
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 38 EEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTK 166
E ++ K++ L P G + ++G + R P + I + + GW +
Sbjct: 76 EPWERKQVQLWPGGVVPYLIGEDLKRRPSFVKKIEQAMEGWER 118
>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
Length = 378
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 211 RLVLVAVRMTAYHNRFRPTRHNPRDTLTQYRFAE 110
+LV R+T Y + T H+PR+T + R E
Sbjct: 10 KLVQSIPRLTLYSRHYNITTHSPRETRSDLRHLE 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,685
Number of Sequences: 59808
Number of extensions: 426006
Number of successful extensions: 1136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -