Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0901
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   285   1e-77
Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   281   2e-76
Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical pr...    32   0.25 
AF022978-10|AAG24180.2|  275|Caenorhabditis elegans Hypothetical...    31   0.75 
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  285 bits (700), Expect = 1e-77
 Identities = 129/183 (70%), Positives = 156/183 (85%), Gaps = 1/183 (0%)
 Frame = +2

Query: 2   KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
           KCATITPDE RVEEFKLKKMW SPNGTIRNILGGTVFREPI+ +++PR+V  W+KPI+IG
Sbjct: 73  KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRLVNTWSKPIIIG 132

Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGT-TERRVLYDFKTPGVAMGMYNTDESIRSF 358
           RHAH DQYKA DFVVP  GK+E+ + + DGT T +  ++DFK PGV++ MYNTD+SIR F
Sbjct: 133 RHAHADQYKATDFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLSMYNTDDSIRDF 192

Query: 359 AHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
           AH+SF+ ALQ+K+PLYLSTKNTILK+YDGRFKDIF E++  +Y+ +F  A IWYEHRLID
Sbjct: 193 AHASFKYALQRKFPLYLSTKNTILKKYDGRFKDIFAEIY-PEYEAEFKAAGIWYEHRLID 251

Query: 539 DMV 547
           DMV
Sbjct: 252 DMV 254


>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  281 bits (690), Expect = 2e-76
 Identities = 124/183 (67%), Positives = 148/183 (80%), Gaps = 1/183 (0%)
 Frame = +2

Query: 2   KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
           KCATITPDE R++EF LKKMWLSPNGTIRNILGGTVFREPILC++IPR+VPGWT+PI IG
Sbjct: 95  KCATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVFREPILCKNIPRLVPGWTQPITIG 154

Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDF-KTPGVAMGMYNTDESIRSF 358
           RHA GDQYK  D V+P    ++L+    DG+ +   +YDF K+ GV + MYNTDESI+ F
Sbjct: 155 RHAFGDQYKCTDLVIPSGSTLQLLVNKPDGSKDVHNVYDFKKSGGVGLAMYNTDESIKGF 214

Query: 359 AHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
           AHS FQ AL K+WPLYLSTKNTILK+YDGRFKDIF+++++  Y+  F   KIWYEHRLID
Sbjct: 215 AHSCFQYALMKQWPLYLSTKNTILKKYDGRFKDIFQDIYEKKYEADFKNNKIWYEHRLID 274

Query: 539 DMV 547
           D V
Sbjct: 275 DQV 277


>Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical
           protein C50B6.11 protein.
          Length = 400

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 335 TDESIRSFAH---SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDE 505
           TD S+R F H       + L ++    L T NT     + +F +I+E  FQ+ + T FD 
Sbjct: 127 TDPSLR-FPHLGACKANLTLDQQTLTKLWTPNTCF--VNSKFAEIYESSFQNVFLTLFDN 183

Query: 506 AKIWYEHRL 532
             +W  +R+
Sbjct: 184 GTVWVNYRV 192


>AF022978-10|AAG24180.2|  275|Caenorhabditis elegans Hypothetical
           protein T01G6.10 protein.
          Length = 275

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 236 GKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLST 415
           G+ E+V +  D      VL +     V  G +NTD+S   + H +FQ+  +    +   T
Sbjct: 72  GQDEIVQSALDAFGRIDVLVNNAGANVVDGTFNTDQSTELY-HKTFQINFEAVIEMVKKT 130

Query: 416 KNTILK 433
           KN +++
Sbjct: 131 KNHLIE 136


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 446 RFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
           ++KD F E    DY+ + D   ++ +H++ID
Sbjct: 228 KWKDTFGEDVDDDYRKRKDSGVVFVKHQVID 258


>Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical
           protein DH11.1 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 192 TATNTRRKILLYRNPERLNLFTLHEMVRQR 281
           T+  T +K ++YR P    L +LHEM+  R
Sbjct: 2   TSKPTTQKSVMYRIPSERTLESLHEMIGSR 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,360
Number of Sequences: 27780
Number of extensions: 315984
Number of successful extensions: 794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)