Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0901
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NA...   285   1e-77
At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA...   278   2e-75
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA...   275   1e-74
At3g21890.1 68416.m02760 zinc finger (B-box type) family protein...    30   0.92 
At3g30848.1 68416.m03974 hypothetical protein contains similarit...    30   1.2  
At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transfera...    28   3.7  
At2g33200.1 68415.m04067 F-box family protein contains F-box dom...    28   3.7  
At2g04280.1 68415.m00420 expressed protein                             28   3.7  
At1g30730.1 68414.m03756 FAD-binding domain-containing protein s...    28   3.7  
At1g53900.1 68414.m06136 eukaryotic translation initiation facto...    28   4.9  
At1g53880.1 68414.m06133 eukaryotic translation initiation facto...    28   4.9  
At5g41970.1 68418.m05110 expressed protein contains Pfam profile...    27   6.5  
At4g12700.1 68417.m01994 expressed protein                             27   6.5  
At1g10880.1 68414.m01250 expressed protein contains Pfam profile...    27   8.6  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    27   8.6  

>At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NADP+) [Nicotiana tabacum]
           GI:3021512; contains Pfam domain PF00180: dehydrogenase,
           isocitrate/isopropylmalate family
          Length = 485

 Score =  285 bits (699), Expect = 1e-77
 Identities = 128/183 (69%), Positives = 151/183 (82%), Gaps = 1/183 (0%)
 Frame = +2

Query: 2   KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
           KCATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C +IPR+VPGW KPI IG
Sbjct: 144 KCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLVPGWEKPICIG 203

Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRV-LYDFKTPGVAMGMYNTDESIRSF 358
           RHA GDQY+A D V+  PGK+++V+   DG     + +YDFK PGVA+ MYN DESIR+F
Sbjct: 204 RHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALAMYNVDESIRAF 263

Query: 359 AHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
           A SS  +AL KKWPLYLSTKNTILK+YDGRFKDIF+EV+++++K KF+E  IWYEHRLID
Sbjct: 264 AESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFEEHSIWYEHRLID 323

Query: 539 DMV 547
           DMV
Sbjct: 324 DMV 326


>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase SP|Q40345 from [Medicago
           sativa]
          Length = 410

 Score =  278 bits (682), Expect = 2e-75
 Identities = 124/182 (68%), Positives = 148/182 (81%)
 Frame = +2

Query: 2   KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
           KCATITPDE RV EF LK+MW SPNGTIRNIL GTVFREPI+C+++P++VPGWTKPI IG
Sbjct: 74  KCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVPKLVPGWTKPICIG 133

Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFA 361
           RHA GDQY+A D V+  PGK+ + +  +DG TE  V       GVAM MYNTDESIR+FA
Sbjct: 134 RHAFGDQYRATDAVIKGPGKLTMTFEGKDGKTETEVFTFTGEGGVAMAMYNTDESIRAFA 193

Query: 362 HSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDD 541
            +S   A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K+K+D A IWYEHRLIDD
Sbjct: 194 DASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKYDAAGIWYEHRLIDD 253

Query: 542 MV 547
           MV
Sbjct: 254 MV 255


>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
           limon]; Nicotiana tabacum SP|P50218
          Length = 416

 Score =  275 bits (675), Expect = 1e-74
 Identities = 124/183 (67%), Positives = 151/183 (82%), Gaps = 1/183 (0%)
 Frame = +2

Query: 2   KCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIG 181
           KCATITPDE RV EF LKKMW SPNGTIRNIL GTVFREPI+C++IPR+VPGWTKPI IG
Sbjct: 74  KCATITPDEARVREFGLKKMWRSPNGTIRNILNGTVFREPIICRNIPRLVPGWTKPICIG 133

Query: 182 RHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRV-LYDFKTPGVAMGMYNTDESIRSF 358
           RHA GDQY+A D +V +PGK++LV+     + +    +++F   GVA+ MYNTDESIR+F
Sbjct: 134 RHAFGDQYRATDLIVNEPGKLKLVFEPSGSSQKTEFEVFNFTGGGVALAMYNTDESIRAF 193

Query: 359 AHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 538
           A SS   A QKKWPLYLSTKNTILK YDGRFKDIF+EV+++++++K++ A IWYEHRLID
Sbjct: 194 AESSMYTAYQKKWPLYLSTKNTILKIYDGRFKDIFQEVYEANWRSKYEAAGIWYEHRLID 253

Query: 539 DMV 547
           DMV
Sbjct: 254 DMV 256


>At3g21890.1 68416.m02760 zinc finger (B-box type) family protein
           contains Pfam profile: PF01760 CONSTANS family zinc
           finger
          Length = 121

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 554 LCPPC-RQLNDARTISWLH-QT*SCSHSEKLLRKCL*NDH 441
           LC  C R ++ A  ++W H +   C+  +KL R+CL  DH
Sbjct: 49  LCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDH 88


>At3g30848.1 68416.m03974 hypothetical protein contains similarity
           to hypothetical proteins
          Length = 156

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 410 STKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHR 529
           STK     + D    ++  ++F +DYKTKF     W E R
Sbjct: 49  STKEKTSGQNDNYVVNLAHQIFYTDYKTKFSLEHAWREVR 88


>At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 387 CKAT*K-LEWAKDRIDSSVLYMPIATPGVLK 298
           CK+T K LEW   R  SSV+Y+   T   LK
Sbjct: 271 CKSTDKCLEWLDSRPKSSVVYISFGTVAYLK 301


>At2g33200.1 68415.m04067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 49  VEENVAKPERNDP*HFGRYSIPRTDIVSEYPEGCAWLDE 165
           +E ++   ER +     ++ I RTDI+S   + C W++E
Sbjct: 119 MESSILGKERLEKEVAWKHFIERTDIISTKKQACLWINE 157


>At2g04280.1 68415.m00420 expressed protein
          Length = 568

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 365 SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWY 520
           S+ Q  +++   LY++T    L  ++   KD +   F  DYK  +DE+  WY
Sbjct: 462 STLQDKVEEGRHLYIATNEGELSFFNP-LKDKYATHFLYDYKDLWDESSEWY 512


>At1g30730.1 68414.m03756 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 526

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 449 FKDIFEEVFQSDYKTKFDEAKIWYEHRLI 535
           FKD FE +   D KTKFDE   W   + I
Sbjct: 496 FKDNFERLV--DIKTKFDEINFWRNEQSI 522


>At1g53900.1 68414.m06136 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|Q64270 Translation initiation factor eIF-2B alpha
           subunit {Rattus norvegicus}; contains Pfam profiles
           PF04525: Protein of unknown function (DUF567), PF01008:
           Initiation factor 2 subunit family
          Length = 644

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 215 DFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSF 358
           DF VP P KVE+  + RD T  + +   F   GV      +DE I+ +
Sbjct: 596 DFSVPVPPKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLY 643


>At1g53880.1 68414.m06133 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|Q64270 Translation initiation factor eIF-2B alpha
           subunit {Rattus norvegicus}; contains Pfam profiles
           PF04525: Protein of unknown function (DUF567), PF01008:
           Initiation factor 2 subunit family
          Length = 637

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 215 DFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSF 358
           DF VP P KVE+  + RD T  + +   F   GV      +DE I+ +
Sbjct: 589 DFSVPVPPKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLY 636


>At5g41970.1 68418.m05110 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 346

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 434 RYDGRFKDIFEEVFQSDYKTKFDEAKIWYEH 526
           RYD   K  FEEVF   + TK   A + Y+H
Sbjct: 83  RYDHHQKG-FEEVFGHGFNTKLSSAGLVYKH 112


>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 365 SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWY 520
           S+ Q  +++   LY++T    L  ++   KD ++  F  ++K  +DE+  WY
Sbjct: 455 STLQDKIEQGRNLYIATNEPELSFFNP-LKDKYKPHFLDEFKDLWDESSEWY 505


>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 651

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 560 NSLCPPCRQLNDARTISWLHQT*SCSHSEKLLRK 459
           N +CP   ++N  RT++W+  +   SH  + +RK
Sbjct: 305 NKICP---EMNSNRTVTWVDWSRGGSHPARFVRK 335


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 388 EKMASIPVYEEYHFETLRW-SFQR 456
           E ++++P Y+E ++E LRW  +QR
Sbjct: 370 ESISAMPAYKEKNYEELRWEDYQR 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,178
Number of Sequences: 28952
Number of extensions: 288579
Number of successful extensions: 750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)