Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0899
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 100 2e-22
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 71 1e-13
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 3.6
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 26 4.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.7
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 4.7
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 6.2
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 8.2
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 100 bits (240), Expect = 2e-22
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
Frame = +2
Query: 11 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 184
+++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE
Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80
Query: 185 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 334
E+ Y +Y L+ + N E +VGW+AT ++ S++I Y+ EP
Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139
Query: 335 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 493
VH+T++T ++ + ++ YV P+G+ C F P T+ E GL+
Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 71.3 bits (167), Expect = 1e-13
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Frame = +2
Query: 17 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 187
V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E
Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76
Query: 188 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 364
+ N+ + E+ +++N++E +VGW+ TG ++ I+ + PV V +D
Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136
Query: 365 GGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 493
+ AY + +G K F + ++ E E +G++
Sbjct: 137 SVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVE 180
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 59 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 184
Y+ R DSHR I L GT + + + + +K H ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.2 bits (55), Expect = 4.7
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +1
Query: 433 HVHSCRCHSHV 465
H+H CRCH+++
Sbjct: 69 HIHCCRCHTYI 79
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 7 QY*CKGPSCCFISNCGRIRTSKCRF 81
Q+ K P C IS R SKCR+
Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRY 1979
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 5 LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 169
LNI ++ +V+ ++++ ++RN D H I + TSD ++ + N F + H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312
Query: 170 AD 175
D
Sbjct: 313 RD 314
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 70 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 213
+ R S SY I ++ SGG + + L A RTC S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 240 LKVLLVGGRLAMK*PTTPLLYTSITPV 320
LKV V +++ PTTP +Y S TPV
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,318
Number of Sequences: 5004
Number of extensions: 51299
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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