BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0899 (720 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 100 2e-22 SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 71 1e-13 SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 3.6 SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 26 4.7 SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.7 SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 4.7 SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 6.2 SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 8.2 >SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 100 bits (240), Expect = 2e-22 Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 15/176 (8%) Frame = +2 Query: 11 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 184 +++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80 Query: 185 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 334 E+ Y +Y L+ + N E +VGW+AT ++ S++I Y+ EP Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139 Query: 335 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 493 VH+T++T ++ + ++ YV P+G+ C F P T+ E GL+ Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194 >SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizosaccharomyces pombe|chr 3|||Manual Length = 324 Score = 71.3 bits (167), Expect = 1e-13 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Frame = +2 Query: 17 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 187 V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76 Query: 188 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 364 + N+ + E+ +++N++E +VGW+ TG ++ I+ + PV V +D Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136 Query: 365 GGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 493 + AY + +G K F + ++ E E +G++ Sbjct: 137 SVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVE 180 >SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1334 Score = 26.6 bits (56), Expect = 3.6 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 59 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 184 Y+ R DSHR I L GT + + + + +K H ++E Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524 >SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 131 Score = 26.2 bits (55), Expect = 4.7 Identities = 6/11 (54%), Positives = 10/11 (90%) Frame = +1 Query: 433 HVHSCRCHSHV 465 H+H CRCH+++ Sbjct: 69 HIHCCRCHTYI 79 >SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2100 Score = 26.2 bits (55), Expect = 4.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 7 QY*CKGPSCCFISNCGRIRTSKCRF 81 Q+ K P C IS R SKCR+ Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRY 1979 >SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 26.2 bits (55), Expect = 4.7 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +2 Query: 5 LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 169 LNI ++ +V+ ++++ ++RN D H I + TSD ++ + N F + H Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312 Query: 170 AD 175 D Sbjct: 313 RD 314 >SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc25|Schizosaccharomyces pombe|chr 1|||Manual Length = 596 Score = 25.8 bits (54), Expect = 6.2 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +1 Query: 70 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 213 + R S SY I ++ SGG + + L A RTC S + T L + CL Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247 >SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 25.4 bits (53), Expect = 8.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 240 LKVLLVGGRLAMK*PTTPLLYTSITPV 320 LKV V +++ PTTP +Y S TPV Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,591,318 Number of Sequences: 5004 Number of extensions: 51299 Number of successful extensions: 151 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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