Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0899
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...   103   1e-22
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    69   3e-12
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   7.7  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score =  103 bits (248), Expect = 1e-22
 Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 20/188 (10%)
 Frame = +2

Query: 2   ALNISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHK 163
           A N++V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P  
Sbjct: 2   ASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFN 61

Query: 164 EHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE---- 331
           E  D +E +  +   +    ++ + +E  VGW+ T +++T+   + H+YY R   E    
Sbjct: 62  ESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASAR 121

Query: 332 ----PVHV-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPEI 481
               P+ V T+DT+ +G    RM +RAY+    G+P   G    +F P+ V L  +  E+
Sbjct: 122 RESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGEL 181

Query: 482 VGLQVCQK 505
           V +Q+ +K
Sbjct: 182 VAMQLIEK 189


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
 Frame = +2

Query: 17  VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 187
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 188 ---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS 358
              +++Y   +Y +  +V + E IVGW+ TG ++  +   I+E   R C  PV V +D  
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160

Query: 359 LAGGRMGLRAYV 394
                +   AY+
Sbjct: 161 PKNIGLPTEAYI 172


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 141 TASACHTKNMPIKSKRNLITRWMFTS 218
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = +2

Query: 17  VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 178
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F   +  +E A+ 
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73

Query: 179 VEAELNYAMDVYELNRRVNSSESIVGWWATGNE 277
           V     + +   +    V     ++G +  G +
Sbjct: 74  VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 128 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 27
           PLL  SCP+ C+ LC        + P F+ K  D
Sbjct: 44  PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 391  CLCTIRSAKWKARLHVHSCRCHSH 462
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,930
Number of Sequences: 27780
Number of extensions: 306231
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)