Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0898
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17197| Best HMM Match : UPF0183 (HMM E-Value=1.7e-36)               30   0.96 
SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)                    29   2.2  
SB_19762| Best HMM Match : Cecropin (HMM E-Value=5)                    27   9.0  
SB_11490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_17197| Best HMM Match : UPF0183 (HMM E-Value=1.7e-36)
          Length = 397

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 300 VPFRPPF*TVYGTDSPLSFSPDLSVGFSVSTFPIQWQILRSNTLARA 160
           +PF P F   +  D  L FSPD ++ FS   F +++Q     T+ RA
Sbjct: 202 LPFSPDFALPFSPDFALPFSPDFALPFS-PDFAVRYQRNLCVTMRRA 247



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 297 PFRPPF*TVYGTDSPLSFSPDLSVGFS 217
           PF P F   +  D  L FSPD ++ FS
Sbjct: 195 PFSPDFALPFSPDFALPFSPDFALPFS 221


>SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)
          Length = 314

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 180 FAESATGSETCSLKSQLRDPARNSVGYQFHRQFKKAA 290
           FAE +TGS TC   S    PA  + G +  R F+++A
Sbjct: 129 FAEESTGSATCVTPS---PPAEKATGPRVRRPFRRSA 162


>SB_19762| Best HMM Match : Cecropin (HMM E-Value=5)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 273 VYGTDSPLSFSPDLSVGFSVSTFPIQWQILRSNTLARASVR 151
           ++G   P+   PDLSV ++     + W I R   L+R  +R
Sbjct: 141 LFGPGKPI---PDLSVAYAKEILRVSWAINRYPVLSRVQLR 178


>SB_11490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 318 RINGGKSEIDLLGTNERQGS 377
           R  GGK E+ LLGTNE + S
Sbjct: 15  RERGGKRELHLLGTNENRPS 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,784,135
Number of Sequences: 59808
Number of extensions: 215889
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)