Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0898
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    31   0.64 
U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.        28   3.4  
U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1 p...    28   3.4  
M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2...    28   3.4  

>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = -3

Query: 456 YILSTINIRIIKLFRFYSVCISASY*YFLVAHLSLVDQFLIFLR*SFLKGSFVPFRPPF* 277
           YILS+      K+F F       S+  F+V   +  D +LIF     LK  F  +     
Sbjct: 115 YILSSAPPSTWKVFMFSVFIYIPSFTQFIVLMFTAADPYLIF---GMLKSKFPDYTFEIS 171

Query: 276 TVYGTDSPLSFSPDLSV-GFSVSTFPIQWQIL 184
           TV G    LS +   S+   +V  F I   IL
Sbjct: 172 TVTGISDALSPAATFSILNMTVPVFAIYTAIL 203


>U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 321 INGGKSEIDLLGTNERQGSINNLRRYILNKTEIT 422
           ING K  + L     R  +I N RR+I N  ++T
Sbjct: 255 INGSKISLGLFSNVNRNATIENTRRHIGNGVKLT 288


>U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1
           protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 321 INGGKSEIDLLGTNERQGSINNLRRYILNKTEIT 422
           ING K  + L     R  +I N RR+I N  ++T
Sbjct: 255 INGSKISLGLFSNVNRNATIENTRRHIGNGVKLT 288


>M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2
           protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 321 INGGKSEIDLLGTNERQGSINNLRRYILNKTEIT 422
           ING K  + L     R  +I N RR+I N  ++T
Sbjct: 255 INGSKISLGLFSNVNRNATIENTRRHIGNGVKLT 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,215
Number of Sequences: 27780
Number of extensions: 162955
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)