Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0898
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 84  RNWMEKSRGE 55
           +NWM+K RGE
Sbjct: 72  QNWMDKFRGE 81


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 198 GSETCSLKSQLRDPARNSVGY 260
           G+ +CS+  ++ DP  NS  Y
Sbjct: 45  GNVSCSVSWEVHDPVTNSDTY 65


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 WAISSIDSSKRRPKR 297
           W +  ++  KRRP+R
Sbjct: 573 WTVDEVEFYKRRPQR 587


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 226 WLFSEHVSDPVAD 188
           W+   H+SD VAD
Sbjct: 424 WIIYLHISDVVAD 436


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 226 WLFSEHVSDPVAD 188
           W+   H+SD VAD
Sbjct: 424 WIIYLHISDVVAD 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,909
Number of Sequences: 438
Number of extensions: 2179
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)