BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0898 (509 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g36180.1 68418.m04361 serine carboxypeptidase S10 family prot... 27 5.5 At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 27 7.3 At2g05850.1 68415.m00634 serine carboxypeptidase S10 family prot... 27 7.3 >At5g36180.1 68418.m04361 serine carboxypeptidase S10 family protein similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa] Length = 441 Score = 27.5 bits (58), Expect = 5.5 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = +2 Query: 197 WIGN--VLTEKPTERSGEKLSGLSVP*TVQ---KGGLKGTNEPL 313 W+G V + P +G+ SGL VP TVQ KG + N P+ Sbjct: 166 WLGKHQVFSSNPFYVAGDSYSGLVVPATVQEISKGNYECCNPPI 209 >At5g07660.1 68418.m00877 structural maintenance of chromosomes (SMC) family protein similar to SMC-like protein (MIM) [Arabidopsis thaliana] GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domain Length = 1058 Score = 27.1 bits (57), Expect = 7.3 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 238 RRETQWAISSIDSSKRRPKRHERALEKGLTEENQKL 345 +RE + + ++S+ RR K+ LEK LT + ++ Sbjct: 662 KREAEMNLEGLESTMRRLKKQRTQLEKDLTRKELEM 697 >At2g05850.1 68415.m00634 serine carboxypeptidase S10 family protein similar to SP|P52711 Serine carboxypeptidase II-3 precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam profile PF0450 serine carboxypeptidase Length = 487 Score = 27.1 bits (57), Expect = 7.3 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 252 LSFSPDLSVGFSVSTFPIQWQI 187 L F +SVGFS S+ P W+I Sbjct: 156 LFFEGPISVGFSYSSTPFDWEI 177 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,993,823 Number of Sequences: 28952 Number of extensions: 157410 Number of successful extensions: 347 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 341 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 347 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 917929344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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