Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0898
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36180.1 68418.m04361 serine carboxypeptidase S10 family prot...    27   5.5  
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    27   7.3  
At2g05850.1 68415.m00634 serine carboxypeptidase S10 family prot...    27   7.3  

>At5g36180.1 68418.m04361 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 441

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 197 WIGN--VLTEKPTERSGEKLSGLSVP*TVQ---KGGLKGTNEPL 313
           W+G   V +  P   +G+  SGL VP TVQ   KG  +  N P+
Sbjct: 166 WLGKHQVFSSNPFYVAGDSYSGLVVPATVQEISKGNYECCNPPI 209


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 238 RRETQWAISSIDSSKRRPKRHERALEKGLTEENQKL 345
           +RE +  +  ++S+ RR K+    LEK LT +  ++
Sbjct: 662 KREAEMNLEGLESTMRRLKKQRTQLEKDLTRKELEM 697


>At2g05850.1 68415.m00634 serine carboxypeptidase S10 family protein
           similar to SP|P52711 Serine carboxypeptidase II-3
           precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
           profile PF0450 serine carboxypeptidase
          Length = 487

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 252 LSFSPDLSVGFSVSTFPIQWQI 187
           L F   +SVGFS S+ P  W+I
Sbjct: 156 LFFEGPISVGFSYSSTPFDWEI 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,823
Number of Sequences: 28952
Number of extensions: 157410
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)