Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0896
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 33 0.29
09_06_0081 + 20745627-20748144,20748211-20748308 31 0.67
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286... 31 0.67
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 31 1.2
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 29 2.7
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 29 2.7
12_02_0678 + 21868038-21868161,21868256-21868587 29 4.7
07_03_1237 + 25073010-25073513 28 8.3
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 28 8.3
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 453 DSPARISVSCSWPSSPRILIIVSSS--NNWQLA 545
D P R+ C WPS P + ++ +S + WQ+A
Sbjct: 666 DDPKRVRARCDWPSCPWVCLLSKNSRTDGWQIA 698
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 370 QFQFRPTTTRPCWGYTIGRVLDPKPSSRILPLE*ASRVLGRHRHAS 507
+F PTTTRP +GY +L P L A R L H H S
Sbjct: 386 RFTVSPTTTRPSFGYDGASLLSATPRMHTTSL--ALRALAPHLHVS 429
>04_04_1264 -
32227812-32228114,32228199-32228349,32228454-32228691,
32228786-32228996,32229077-32229270,32229334-32229450,
32229580-32230522
Length = 718
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGY-VSDYNT 200
DCN+ C P G D A RC C DG+ SD+N+
Sbjct: 179 DCNLYASCGPFGYCD-FTLAIPRCQCLDGFEPSDFNS 214
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 679 F*QHKACRSLNRRSEIIIEGNTHECHKTLTPCSTHSDCNL-CREGLANCQLFDEDTIIKM 503
F + K + +E I+EG T++C++ T T L EG F++ II M
Sbjct: 328 FREEKLTFRVTESTEEIVEGQTYQCYRYPTMTKTRCGFKLSVTEG-----SFNDSQIIVM 382
Query: 502 RGDDGQEHETLIR 464
G++G T IR
Sbjct: 383 LGENGTGKTTFIR 395
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 331 VTQLNMYEDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCR 176
+T L++Y+ C + C G + + RC C DG+ + N DT P R
Sbjct: 4 LTNLSIYDPCLLQY-CGDGGSCERSSEFGHRCACHDGFQNLLN-DTSYPCYR 53
>02_03_0084 -
15041261-15041437,15041625-15041765,15042857-15042946,
15043111-15043201,15043953-15044155,15045361-15045438,
15045535-15045651,15046111-15046161,15046405-15046500,
15046726-15046742,15046938-15047064,15050585-15050681,
15051565-15051638,15051910-15051993,15052099-15052290,
15054191-15054319,15055607-15055639,15055747-15055843,
15055940-15055990,15057494-15057564,15058305-15058455,
15058625-15058703,15059265-15059346,15060335-15060335,
15060565-15060620,15060969-15061018,15061511-15061580
Length = 834
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 433 DPKPSSRILPLE*ASRVLGRHRHAS*LLYLRRTTGSWLILRGTD 564
DP PS LP+ + R H+ A + RRT G+W RG+D
Sbjct: 622 DPSPSFHGLPMSSSVRTSPAHQPAH-SMRSRRTGGTWARPRGSD 664
>12_02_0678 + 21868038-21868161,21868256-21868587
Length = 151
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 412 NPNTGVWLLAETETGFALLCSCLRPGLVT 326
+P G L AE E G +L SC P LVT
Sbjct: 59 DPKAGPALAAEAENGSMMLWSCAPPKLVT 87
>07_03_1237 + 25073010-25073513
Length = 167
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 700 GALSYCGF*QHKACRSLNRRSEIIIEGNTHECHK-TLTPCSTHSDCNLCRE 551
G + GF H+AC +L +R ++ G H H+ TL+ + C CRE
Sbjct: 49 GGAACGGFDVHEACLTLPKRVKL---GRRHRDHELTLSVLTASRRCVACRE 96
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -2
Query: 310 EDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
+DC+ GC G S +C C DG + +T T T P
Sbjct: 220 QDCD---GCRRRGGECRFEQLSFQCFCPDGLLCSNSTRTNTTSSHP 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,841,042
Number of Sequences: 37544
Number of extensions: 431448
Number of successful extensions: 1309
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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