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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0896
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237...    33   0.29 
09_06_0081 + 20745627-20748144,20748211-20748308                       31   0.67 
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286...    31   0.67 
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541...    31   1.2  
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681     29   2.7  
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    29   2.7  
12_02_0678 + 21868038-21868161,21868256-21868587                       29   4.7  
07_03_1237 + 25073010-25073513                                         28   8.3  
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    28   8.3  

>06_03_1309 +
           29223197-29223240,29223358-29223592,29223695-29223783,
           29223870-29223968,29224065-29224158,29224297-29224514,
           29224861-29224967,29225298-29225472,29225596-29225743,
           29226548-29226596,29228016-29228162,29229990-29229996,
           29230417-29230482,29230773-29231991,29232073-29233149,
           29233226-29233355,29233519-29233617,29233817-29233878,
           29234429-29234533
          Length = 1389

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 453 DSPARISVSCSWPSSPRILIIVSSS--NNWQLA 545
           D P R+   C WPS P + ++  +S  + WQ+A
Sbjct: 666 DDPKRVRARCDWPSCPWVCLLSKNSRTDGWQIA 698


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 370 QFQFRPTTTRPCWGYTIGRVLDPKPSSRILPLE*ASRVLGRHRHAS 507
           +F   PTTTRP +GY    +L   P      L  A R L  H H S
Sbjct: 386 RFTVSPTTTRPSFGYDGASLLSATPRMHTTSL--ALRALAPHLHVS 429


>04_04_1264 -
           32227812-32228114,32228199-32228349,32228454-32228691,
           32228786-32228996,32229077-32229270,32229334-32229450,
           32229580-32230522
          Length = 718

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGY-VSDYNT 200
           DCN+   C P G  D    A  RC C DG+  SD+N+
Sbjct: 179 DCNLYASCGPFGYCD-FTLAIPRCQCLDGFEPSDFNS 214


>02_02_0464 -
           10552347-10552466,10552683-10552928,10553866-10554135,
           10554231-10554413,10554493-10554688,10554775-10555079,
           10555515-10555604,10555689-10555806,10555991-10556088,
           10556187-10556272,10557622-10557736
          Length = 608

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 679 F*QHKACRSLNRRSEIIIEGNTHECHKTLTPCSTHSDCNL-CREGLANCQLFDEDTIIKM 503
           F + K    +   +E I+EG T++C++  T   T     L   EG      F++  II M
Sbjct: 328 FREEKLTFRVTESTEEIVEGQTYQCYRYPTMTKTRCGFKLSVTEG-----SFNDSQIIVM 382

Query: 502 RGDDGQEHETLIR 464
            G++G    T IR
Sbjct: 383 LGENGTGKTTFIR 395


>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
          Length = 118

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 331 VTQLNMYEDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCR 176
           +T L++Y+ C +   C   G  +  +    RC C DG+ +  N DT  P  R
Sbjct: 4   LTNLSIYDPCLLQY-CGDGGSCERSSEFGHRCACHDGFQNLLN-DTSYPCYR 53


>02_03_0084 -
           15041261-15041437,15041625-15041765,15042857-15042946,
           15043111-15043201,15043953-15044155,15045361-15045438,
           15045535-15045651,15046111-15046161,15046405-15046500,
           15046726-15046742,15046938-15047064,15050585-15050681,
           15051565-15051638,15051910-15051993,15052099-15052290,
           15054191-15054319,15055607-15055639,15055747-15055843,
           15055940-15055990,15057494-15057564,15058305-15058455,
           15058625-15058703,15059265-15059346,15060335-15060335,
           15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 433 DPKPSSRILPLE*ASRVLGRHRHAS*LLYLRRTTGSWLILRGTD 564
           DP PS   LP+  + R    H+ A   +  RRT G+W   RG+D
Sbjct: 622 DPSPSFHGLPMSSSVRTSPAHQPAH-SMRSRRTGGTWARPRGSD 664


>12_02_0678 + 21868038-21868161,21868256-21868587
          Length = 151

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 412 NPNTGVWLLAETETGFALLCSCLRPGLVT 326
           +P  G  L AE E G  +L SC  P LVT
Sbjct: 59  DPKAGPALAAEAENGSMMLWSCAPPKLVT 87


>07_03_1237 + 25073010-25073513
          Length = 167

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 700 GALSYCGF*QHKACRSLNRRSEIIIEGNTHECHK-TLTPCSTHSDCNLCRE 551
           G  +  GF  H+AC +L +R ++   G  H  H+ TL+  +    C  CRE
Sbjct: 49  GGAACGGFDVHEACLTLPKRVKL---GRRHRDHELTLSVLTASRRCVACRE 96


>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 310 EDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
           +DC+   GC   G        S +C C DG +   +T T T    P
Sbjct: 220 QDCD---GCRRRGGECRFEQLSFQCFCPDGLLCSNSTRTNTTSSHP 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,841,042
Number of Sequences: 37544
Number of extensions: 431448
Number of successful extensions: 1309
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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