Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0896
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    30   1.3  
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ...    30   1.7  
At5g61180.1 68418.m07675 hypothetical protein contains Pfam prof...    29   2.3  
At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ...    29   3.0  
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    29   3.0  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    29   3.0  
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative...    29   3.9  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At1g19030.1 68414.m02369 hypothetical protein                          29   3.9  
At5g63230.1 68418.m07937 glycosyl hydrolase family protein 17 si...    28   5.2  
At5g55440.1 68418.m06906 hypothetical protein contains Pfam prof...    28   5.2  
At5g02910.1 68418.m00234 F-box family protein similar to ribosom...    28   5.2  
At2g21810.1 68415.m02592 CHP-rich zinc finger protein, putative        28   5.2  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    27   9.1  

>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 685 CGF*QHKACRSLNRRSEIIIEGNTHECHKTLTPCSTHSDCNLCR---EGLANCQLFDE 521
           C F  HK C SL RR   I+  +T +    +T    ++ C  CR   +G   C  F++
Sbjct: 308 CEFFLHKVCASLPRRKRNIM--HTEKLDLQVTKAGEYNKCISCRKIFDGFRYCSRFEK 363


>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 220 YVSDYNTDTETPYCRPRTVRDVMHDESFF 134
           +V++Y TD ETP     T  DV H    F
Sbjct: 65  FVNEYKTDNETPTMEEETYSDVYHSPEAF 93


>At5g61180.1 68418.m07675 hypothetical protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 346

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 310 EDCNVPVGCAPHGRIDNINS 251
           E+C VP GC PHG   +I S
Sbjct: 89  ENCEVPKGCDPHGVAQSIRS 108


>At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 476

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 310 EDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSDYN 203
           + C++PV C P+G      S S   V  +GY S  N
Sbjct: 287 DTCDLPVACKPYGICTFSKSCSCIKVVSNGYCSSIN 322


>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 242 DRSAVDIVDTAVRRAAHGHVAIFVH-VKLRNK 334
           DR+ V+ +D AVR   HG   ++VH V+++N+
Sbjct: 234 DRTTVEDMDLAVRACLHGWKFVYVHDVEVKNE 265


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 242 DRSAVDIVDTAVRRAAHGHVAIFVH-VKLRNK 334
           DR+ V+ +D AVR   HG   ++VH V+++N+
Sbjct: 306 DRTTVEDMDLAVRACLHGWKFVYVHDVEVKNE 337


>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
           strong similarity to gi:4467359
          Length = 1116

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 229 DDGYVSDYNTDTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYRRHFRLE 50
           DDG  S+ +  +E    R    R     ++  P   C++G      PG  +F+R+ FR  
Sbjct: 442 DDGNESEDDESSEFSLFRRLFRRHPEDVKTTLPSENCSNGGFVESSPGTENFFRKLFRDR 501

Query: 49  DICVID 32
           D  V D
Sbjct: 502 DRSVED 507


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 397 VWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDNI 257
           V +   T T  +L+ +C   GLV Q N   +  +  GC P+ +  NI
Sbjct: 403 VGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNI 449


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 517 YLRRTTGSWLILRGTDCNHCVWSTASKFCDIRVYCLRLLFRTGGSMS 657
           YL R    WL+   T C   +W    K+ D      R+  R G + S
Sbjct: 138 YLIRRGSFWLVKENTTCGSWIWKKILKYRDTAKSFYRVEVRNGEASS 184


>At5g63230.1 68418.m07937 glycosyl hydrolase family protein 17
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 178

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 133 PRAPCADGQVRLDHPG--LNDFYRRHFRLEDIC 41
           P   C +    LDH    +N +Y+ H R+ED C
Sbjct: 124 PGGTCYEPNTLLDHASFAMNAYYQSHGRIEDAC 156


>At5g55440.1 68418.m06906 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 365

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 235 VCDDGYVSDYNTDTETPYCRPRTVRDVMHDESFFPRAPCAD 113
           V DD YV+    D     CRPR   D  H+E+ +   P ++
Sbjct: 136 VQDDYYVAAKFNDYHVSVCRPRWDSDWTHNETGYSLLPASE 176


>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
           RNA apurinic site specific lyase [Triticum aestivum]
           GI:6505722; contains F-box domain Pfam:PF00646
          Length = 458

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = -2

Query: 595 LTPCSTHSDCNLCREGLANCQLFDEDTIIKMRGDDGQEHETLIRAGESYCLALDR-ERAR 419
           L P  T S  +L    L+NC L DE  +  + G    E   L+   E  CL L + +  R
Sbjct: 144 LIPRCTVSWTSLKNLSLSNCTLSDESFLKILSGSPLLESLELLYCAEYMCLDLSQSQHLR 203

Query: 418 SCNPNTGVWLLAETETGFALLCSCLR 341
               +   W +  T+   A    CLR
Sbjct: 204 RLEIDRSDWFMGPTKI-VAPHLHCLR 228


>At2g21810.1 68415.m02592 CHP-rich zinc finger protein, putative 
          Length = 128

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 685 CGF*QHKACRSLNRRSEIIIEGNTHECHKTLTPCSTHSDCNLCREGLANCQLF 527
           C F  H+ C  L R S      N      T  P      C++CRE + +  LF
Sbjct: 35  CRFETHQYCVELGRPSRHRFHQNHPLTLLTKYPSQEKMKCDICRENIYDFNLF 87


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 310 EDCNVPVGCAPHGRIDNINSASIRCVCDDGY 218
           E C+    C P+G  D+ +S +  C C  G+
Sbjct: 350 EQCDNYAHCGPNGYCDSPSSKTFECTCLPGF 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,410,176
Number of Sequences: 28952
Number of extensions: 326895
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)