Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0895
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    31   0.014
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.52 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.52 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.4  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 0.014
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 411 FSMRSLPLSVRMMCRLGSRF-LERYATSLCQSCSSTKVRSARVSGGSAAPECSKRTLSTC 235
           F  RS+  +    C+ G+   ++ Y    CQ C   K  S  +      PEC    +   
Sbjct: 211 FFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMR-----PECVVPEVQCA 265

Query: 234 LGRREARLARRKDSSSASTS 175
           + R+E +  + KD  +++T+
Sbjct: 266 VKRKEKKAQKEKDKPNSTTN 285


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 345 SPRTCCPSDTSCAPRGAGTSSKNSPGPRSC 434
           +P+T  P++ S +P+   TSS NS  P++C
Sbjct: 150 TPKTS-PNEASMSPQS--TSSNNSASPKAC 176


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 345 SPRTCCPSDTSCAPRGAGTSSKNSPGPRSC 434
           +P+T  P++ S +P+   TSS NS  P++C
Sbjct: 170 TPKTS-PNEASMSPQS--TSSNNSASPKAC 196


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 373 VSLGQQVLGEVRHELVPVLQQHEGP 299
           +S+ QQ+L E +  L+P+    E P
Sbjct: 19  LSIPQQILNEFKSTLLPLFGLKEQP 43


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 IEKL-TRAKELLRVKSDEAIEKCEKNAFEKK 493
           +EKL T  KEL   +  E +++ + N  EK+
Sbjct: 51  VEKLLTEQKELAEKEEAETLKRYKLNDLEKR 81


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 IEKL-TRAKELLRVKSDEAIEKCEKNAFEKK 493
           +EKL T  KEL   +  E +++ + N  EK+
Sbjct: 211 VEKLLTEQKELAEKEEAETLKRYKLNDLEKR 241


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 IEKL-TRAKELLRVKSDEAIEKCEKNAFEKK 493
           +EKL T  KEL   +  E +++ + N  EK+
Sbjct: 211 VEKLLTEQKELAEKEEAETLKRYKLNDLEKR 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,152
Number of Sequences: 336
Number of extensions: 3272
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)