Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0895
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    29   0.57 
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    29   0.57 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   5.3  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    26   7.0  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   7.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 475 KRLRKEDPPVDSSTARDGWGLCNNGGFILLTICYRDL 585
           KRL K DP V  +T+  G  +    G + L IC +DL
Sbjct: 509 KRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDL 545


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 475 KRLRKEDPPVDSSTARDGWGLCNNGGFILLTICYRDL 585
           KRL K DP V  +T+  G  +    G + L IC +DL
Sbjct: 509 KRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDL 545


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 303 PSCCCRTGTSSWRT-SPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKT 479
           P+    TGTSS    S  T C + TS  P G  T+      P +   S+   P  ++  T
Sbjct: 319 PASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS--T 376

Query: 480 PSKRRSSCRLLDGS 521
            S   SS  LL  S
Sbjct: 377 SSTGTSSSPLLSTS 390


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 351 LERYATSLCQSCSSTKVRSARVSGGSAAPECSKRTLSTCLGRREARLARR 202
           L +    + ++C + + R  + SGG    EC K     C+ R+  R  +R
Sbjct: 3   LSKRPVRISKACENCRKRKVKCSGGDVCFECQKYN-ENCVYRQFYRKIKR 51


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 782 QFNMTPVTRDVYKLSPLKFLLDQTALACLNNNRRKIPGYRITVFSFILYEPLH*MSPK 609
           +F +    RD+  L+ LK  L QTA   LN   +      I V  FI YE L   +P+
Sbjct: 3   KFLLNRCIRDLSPLTVLKDNLQQTAKPILNYYAKNAASRGIKVL-FISYETLEKEAPE 59


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 725 LLDQTALACLNNNRRKIPGYRITVFSFILYEPLH*MSPKIPLQHEP 588
           L+  T    LN N  +   ++  ++SF ++ P H M  ++ +Q +P
Sbjct: 211 LVRHTGYLLLNINSHEAKNWKTRIYSFSVFFPEH-MDSRVLVQSDP 255


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 342 YATSLCQSCS---STKVRSARVSGGSAAPECSKRTLSTCLGRREARLARRKDSSSASTS 175
           YA++  QS S   ST   +  VSGGS  P  +  T ++ +    +  A    SSS+S+S
Sbjct: 125 YASNYTQSSSNSTSTMNSTGSVSGGSVYP--TNSTTNSSISWNSSTSAATNTSSSSSSS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,383
Number of Sequences: 5004
Number of extensions: 52930
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)