Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0895
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0105 + 25607374-25607673,25608319-25608377,25608761-256089... 31 1.4
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 30 2.4
03_01_0119 + 935554-937161 29 3.2
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 29 3.2
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 29 4.2
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 29 4.2
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 29 5.5
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 29 5.5
07_03_1026 - 23369298-23370326 28 7.3
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 28 7.3
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 28 7.3
01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803 28 7.3
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 28 9.6
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 9.6
07_03_1110 + 24047851-24047871,24047960-24048352,24048447-24048488 28 9.6
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 28 9.6
>05_06_0105 +
25607374-25607673,25608319-25608377,25608761-25608917,
25609157-25609461,25609866-25609986,25610334-25610422,
25610491-25610569
Length = 369
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = -3
Query: 432 SSLALVSFSMRSLPLSVRMMCRLGSRFLERYATSLCQSCSSTKVRSARVSGGSAA---PE 262
SSL+ + ++RS + L + R A S + + +GGSA
Sbjct: 16 SSLSSSAAALRSAAVLHGNQSSLARSLVSRLAVSTDPAIDALVCSGRGSAGGSARLFQRH 75
Query: 261 CSKRTLST----CLGRREARLARRKDSSSASTSL 172
++R +ST C+GRR ++A RK S + + SL
Sbjct: 76 AARRRISTFQPLCMGRRSCKIAGRKLSDTTTNSL 109
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +3
Query: 363 PSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGSGRV 530
P S S SPGP S +L PS SA P RR L D +GR+
Sbjct: 21 PRHHSIKHLACAASRSPSPGPSSSRSLALPSPSASASPWPWPRRLRDLLPDETGRI 76
>03_01_0119 + 935554-937161
Length = 535
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -3
Query: 384 VRMMCRLGSRFLERYATSLCQSCSSTKVRSARVSGGSAAPECSKRTLSTCLGRREARLAR 205
V+++ ++ E+ AT +CQ S VS G+ P + LGR +A +
Sbjct: 177 VQLLTAPATKVREKAATVICQLAESGGCEGLLVSEGALPPLIRLAESGSLLGREKAVITL 236
Query: 204 RKDSSSASTS 175
++ S S+ T+
Sbjct: 237 QRLSMSSDTA 246
>02_03_0199 +
16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 552 SAIITQPPPVPSRRGVYRRIFFSKAFFSHF---SMASSDLTLNSSLALVSFSMRSLPLSV 382
+A+ PPP P+ GV +R ++ +S F M +T NSS L S R LP+ +
Sbjct: 20 AALALDPPPAPAMLGVSQRCSYTFMPYSPFRPCEMCGVSVTNNSSRQLSSIRSR-LPVRL 78
Query: 381 R 379
+
Sbjct: 79 K 79
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 17 YDGDVAGTPHGDPFLWAEEAFRTATHVLYAAGPPEHVHLYPNIYDKP 157
+ VA +P G P++W + Y PP +V P +Y P
Sbjct: 53 FPSPVASSPQGHPYMWGAQPMIPP----YGTPPPPYVMYPPGVYAHP 95
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 PFLWAEEAFRTATHV-LYAAGPPEHVHLYPNIYDKPIL 163
PF+W EEA R T + +Y + PP V P D+P+L
Sbjct: 758 PFIWTEEAERALTQLKVYLSSPPVLVAPEP---DEPLL 792
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 396 LPLSVRMMCRLGSRFLERYATSLCQSCSSTKVRS-ARVSGGSAAP 265
L L+ R CR +R L R ++ C+ CS+ ++R A V S P
Sbjct: 369 LQLAARFACRYTARCLCRISSLTCRRCSTRRLRDLAAVVTSSPLP 413
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 PFLWAEEAFRTATHV-LYAAGPPEHVHLYPNIYDKPIL 163
PF+W EEA R T + Y + PP V P D+P+L
Sbjct: 1094 PFIWTEEAERALTQLKAYLSSPPVLVASEP---DEPLL 1128
>07_03_1026 - 23369298-23370326
Length = 342
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 372 CRLGSRFLERYATSLCQSCSSTK---VRSARVSGGSAAPECSKR 250
C+ G R E+ A S Q C+ T+ VRSAR + +A+P SK+
Sbjct: 180 CKNGERGQEKDAES-AQGCARTRSPPVRSARATTPAASPSRSKK 222
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 PFLWAEEAFRTATHV-LYAAGPPEHVHLYPNIYDKPIL 163
PF+W EEA R T + Y + PP V P D+P+L
Sbjct: 865 PFIWTEEAERALTQLKAYLSSPPVLVAPEP---DEPLL 899
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 PFLWAEEAFRTATHV-LYAAGPPEHVHLYPNIYDKPIL 163
PF+W EEA R T + Y + PP V P D+P+L
Sbjct: 1086 PFIWTEEAERALTQLKAYLSSPPVLVAPEP---DEPLL 1120
>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
Length = 298
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 321 TGTSSWRTSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRS 467
T T+SW +SP T S T+ + +SS N P P S M P S
Sbjct: 208 TTTTSW-SSPSTGTTSPTASSSTDGSSSSSNLPWPAVDVHDSTMMPPLS 255
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 269 AALPPETRADRTFVLLQDWHKLVAYLSKNLLPKRHIMRTERGRDLIEKLTRAKELLRVKS 448
A LPPE + ++ L W K ++ LS N P + I G++++ + L+
Sbjct: 254 AKLPPEEVGEASYELYSSWQKQLSDLSWN--PFKTITVDGNGKEIVNVDDEKLQELKRDY 311
Query: 449 DEAIEKCEKNA 481
E K NA
Sbjct: 312 GEGAHKAVMNA 322
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +3
Query: 345 SPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARK-TPSKRRSSCR 506
SPR C P+ + K P PR ES+ P R K S + S CR
Sbjct: 352 SPRRFCQDPRESLPKDESPAMKTKPSPRILTESA---PWRQQEKIATSSKASQCR 403
>07_03_1110 + 24047851-24047871,24047960-24048352,24048447-24048488
Length = 151
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 249 TLSTCLGRR--EARLAR-RKDSSSAST-SLCALRMGLS*MLG*RCTCSGGPAAYSTCVAV 82
T++ +GRR ARLA R D A+ S AL + + ML C PAA + VA
Sbjct: 21 TIAASIGRRILGARLAAWRSDGLGATCMSFAALTLAMQAMLA--CVLEEKPAAAAAAVAR 78
Query: 81 RKAS 70
R AS
Sbjct: 79 RPAS 82
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 366 SDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKR 491
+D R SS +SP P SS KP R++P KR
Sbjct: 13 ADLQALARRFSFSSSSSPSPSPSPPSSSRKPPLPPRRSPQKR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,504,295
Number of Sequences: 37544
Number of extensions: 423341
Number of successful extensions: 1534
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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