Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0895
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.60 
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    29   3.2  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   29   5.6  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        28   7.4  
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            28   9.8  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   28   9.8  
SB_17984| Best HMM Match : DUF662 (HMM E-Value=4.7)                    28   9.8  

>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 315 CRTGTSSWRTSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESS 446
           C  GT     +P TC P++ +CA +    S     G R C ++S
Sbjct: 692 CGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCDGDRDCADNS 735


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 318 RTG-TSSWRTSPRTCCPSDTSCAPRGAGTSSKNSPGPRS-C*ESSLMKPSRSARKTPSKR 491
           RTG  S W   PR+   +D S +    GTSSK+    ++   E +L + +RS +K   K+
Sbjct: 739 RTGRVSIWDDPPRSRIKTDDSASSTTGGTSSKHLDYDQAERNEDTLERMARSRKKNQRKK 798

Query: 492 RSSCRLLDG 518
               RL  G
Sbjct: 799 LKRKRLKGG 807


>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 342 TSPRTCCPSDTSCAPRGAGTSSKNSPGP-RSC*ESSLMKPSRSARKTPSKRRSSC 503
           T+PR C  S T  A R + TSS+ S        +  ++KP RS RK   +R   C
Sbjct: 85  TNPRKCYSSSTIKAFRKSSTSSRLSDDLWMELKDLGILKPYRSRRKRRKQRTRPC 139


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 478 RLRKEDPPVDSSTARDGWGLCNNGGFILLTICYRDL 585
           RL K DP V S T   G  +    G + L IC +DL
Sbjct: 500 RLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDL 535


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 321 TGTSSWRTSPRTCCPSDTSC--APRGAGTSSKNS---PGPRSC*ESSLMKPSRSARKTPS 485
           T  +S R SPR   P D S   +PR +  SS+ S   P PRS   +S  K SR + +  S
Sbjct: 329 TPRASPRASPRAS-PRDQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSSRKLSRKSSRKSS 387

Query: 486 KRRS 497
           +  S
Sbjct: 388 RPTS 391


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 300 RSARVSGGSAAPECSKRTLSTCLGRREARLARRKDSSSASTS 175
           R  R  GGS   +  +R  S    RR+ R  RR+DSSS S S
Sbjct: 220 REGRQGGGSRDRDSQRRERSPVPERRQER--RRQDSSSPSVS 259


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/52 (40%), Positives = 24/52 (46%)
 Frame = +3

Query: 369 DTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGSG 524
           D  C PRG+  SS N P  R C    L K   + RK+     S  RL D SG
Sbjct: 654 DCGCDPRGSANSSCN-PFTRQC----LCKVVLTYRKSTDSTDSDLRLGDLSG 700


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 374 IMRTERGRDLIEKLTRAKELLRVKSDEAIEKCEKNAFEKK 493
           ++R ERG +  EKL  +K   + K   +I+K   +  E+K
Sbjct: 868 VVRQERGTESAEKLKESKPKEKAKKKRSIDKKRVSPVERK 907


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 520 RDGWGLCNNGGFILLTICYR 579
           + G G CN+ G +LLT+C R
Sbjct: 73  KHGVGKCNSNGLLLLTLCAR 92


>SB_17984| Best HMM Match : DUF662 (HMM E-Value=4.7)
          Length = 301

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 520 RDGWGLCNNGGFILLTICYR 579
           + G G CN+ G +LLT+C R
Sbjct: 51  KHGVGKCNSNGLLLLTLCAR 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,226,139
Number of Sequences: 59808
Number of extensions: 438406
Number of successful extensions: 1478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)