Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0895
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.70
U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical pr... 30 2.1
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 29 2.8
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 28 6.6
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 28 6.6
U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in bl... 28 6.6
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 28 6.6
AF022984-3|AAB69951.1| 343|Caenorhabditis elegans Hypothetical ... 28 6.6
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 6.6
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 25 7.2
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 8.7
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 8.7
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 28 8.7
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 28 8.7
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 28 8.7
U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein. 28 8.7
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 28 8.7
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 8.7
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 8.7
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 28 8.7
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 8.7
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.53
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +3
Query: 327 TSSWRTSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCR 506
T+ +SP PS +P GTSS SP P S S+L S SA +PS S+
Sbjct: 7 TAGISSSPAATSPSTAVTSPSSLGTSS--SPLPSSISTSALPIASSSASSSPSAASSTTP 64
Query: 507 LLDGSGRV 530
++ S +
Sbjct: 65 VVLSSSTI 72
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Frame = +3
Query: 312 CCRTGTSSWRTSPRT----------CCPSDTSCAPRGA---GTSSKNSPGPRSC*ESSLM 452
CC+ G ++W P CCP+ T+C P+GA G K+ P M
Sbjct: 110 CCKLGDNTWGCCPMPNAVCCDDRSHCCPTGTTCDPQGARCIGADEKHVP----------M 159
Query: 453 KPSRSARKTPSKRR 494
K + ARKT + +
Sbjct: 160 KKKKPARKTVERNQ 173
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Frame = +3
Query: 312 CCRTGTSSWRTSPRT----------CCPSDTSCAPRGA---GTSSKNSPGPRSC*ESSLM 452
CC+ G ++W P CCP+ T+C P+GA G K+ P M
Sbjct: 110 CCKLGDNTWGCCPMPNAVCCDDRSHCCPTGTTCDPQGARCIGADEKHVP----------M 159
Query: 453 KPSRSARKTPSKRR 494
K + ARKT + +
Sbjct: 160 KKKKPARKTVERNQ 173
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 0.70
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 324 GTSSWR-TSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKR 491
GT++WR TSP PS +P + SS ++P P SSL S S TP KR
Sbjct: 507 GTNTWRSTSPSAVEPSG-GMSPISSSVSSASAPSP-----SSLSAGSVSPDSTPKKR 557
>U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical
protein C10G11.9 protein.
Length = 203
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 339 RTSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCR 506
R+ PRT S +S R S R + + + +A+KTP+KRRS R
Sbjct: 135 RSRPRTRSGSRSSSRSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAKRRSRSR 190
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 339 RTSPRTCCPSDTSCAPR-GAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCR 506
R+ PRT S +S R G+ SS+ RS ++ + S +A+KTP+KRRS R
Sbjct: 135 RSRPRTRSGSRSSSRSRSGSRRSSRRRSRHRSSSKARGRRAS-TAKKTPAKRRSRSR 190
Score = 27.9 bits (59), Expect = 8.7
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 318 RTGTSSWRTSPRTCCPSDTSCAPRGAGTSSKNSP-GPRSC*ESSLMKPSRSARKTPSKRR 494
R S+ R+S R S +G +SS+ S G SS SRS +T S R
Sbjct: 86 RRRPSTRRSSSRRSVVRSVSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSR 145
Query: 495 SSCRLLDGSGR 527
SS R GS R
Sbjct: 146 SSSRSRSGSRR 156
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 381 APRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGSGR 527
+P + ++ SP P S E+ LMKP +S K KR+ S + R
Sbjct: 148 SPVSSDMTTSKSPTP-SKKENGLMKPPQSTEKAQRKRKESTDIFSSEKR 195
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 381 APRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGSGR 527
+P + ++ SP P S E+ LMKP +S K KR+ S + R
Sbjct: 148 SPVSSDMTTSKSPTP-SKKENGLMKPPQSTEKAQRKRKESTDIFSSEKR 195
>U58742-4|AAB36856.1| 242|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 3 protein.
Length = 242
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 339 ATSLCQSCSSTKVRSARVSGGSAAPECSKRTLSTC 235
A CQ C +T +SA V AP+C ++ C
Sbjct: 80 AAPQCQQCQNTCQQSAPVCQQQCAPQCQQQFAPAC 114
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 381 APRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGSGR 527
+P + ++ SP P S E+ LMKP +S K KR+ S + R
Sbjct: 148 SPVSSDMTTSKSPTP-SKKENGLMKPPQSTEKAQRKRKESTDIFSSEKR 195
>AF022984-3|AAB69951.1| 343|Caenorhabditis elegans Hypothetical
protein ZK488.4 protein.
Length = 343
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 426 LALVSFSMRSLPLSVRMMCRLGSRF-LERYATSLCQSCSSTKVRSARVSGG 277
+A SF R++ +R +C+ G+R + + C+SC K S ++ G
Sbjct: 1 MACASFFRRTVSFGIRFLCKEGNRCPISQEIRFFCRSCRYDKCISVGMNRG 51
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 342 TSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKTPSK 488
T+P T TS P + TSS +SP P + + +P+ +++ T S+
Sbjct: 263 TNPPTATSPKTSSQPVSSSTSSTSSPAPTN--PPTTSRPTTASQSTASQ 309
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 25.0 bits (52), Expect(2) = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 306 SCCCRTGTSSWRTSPRTCCP 365
SCC + SS + P CCP
Sbjct: 54 SCCSSSCCSSQKPIPLACCP 73
Score = 21.4 bits (43), Expect(2) = 7.2
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +3
Query: 357 CCPSDTSCAPR 389
CCP+ +C P+
Sbjct: 89 CCPATPNCCPK 99
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 327 CQSCSSTKVRSARVSGGSAAPECSKRTLSTC 235
CQ C +T ++A V AP+C +++ C
Sbjct: 262 CQQCQNTCQQAAPVCQQQCAPQCQQQSAPAC 292
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 327 CQSCSSTKVRSARVSGGSAAPECSKRTLSTC 235
CQ C +T ++A V AP+C +++ C
Sbjct: 262 CQQCQNTCQQAAPVCQQQCAPQCQQQSAPAC 292
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 318 CSSTKVRSARVSGGSAAPECSKRTLSTCLGRR 223
C+ + +S GS +CS+R C GRR
Sbjct: 643 CADCDIEFGFLSRGSKCVKCSRRLCKKCFGRR 674
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 318 CSSTKVRSARVSGGSAAPECSKRTLSTCLGRR 223
C+ + +S GS +CS+R C GRR
Sbjct: 643 CADCDIEFGFLSRGSKCVKCSRRLCKKCFGRR 674
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 393 AGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGS 521
A S+ +SPGP SSLM + S + P RR RLLD S
Sbjct: 375 APPSAVSSPGP-----SSLMSLNLSTPEPPLNRRQRRRLLDSS 412
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 393 AGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGS 521
A S+ +SPGP SSLM + S + P RR RLLD S
Sbjct: 459 APPSAVSSPGP-----SSLMSLNLSTPEPPLNRRQRRRLLDSS 496
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 393 AGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGS 521
A S+ +SPGP SSLM + S + P RR RLLD S
Sbjct: 463 APPSAVSSPGP-----SSLMSLNLSTPEPPLNRRQRRRLLDSS 500
>U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein.
Length = 551
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 393 AGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGS 521
A S+ +SPGP SSLM + S + P RR RLLD S
Sbjct: 459 APPSAVSSPGP-----SSLMSLNLSTPEPPLNRRQRRRLLDSS 496
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 393 AGTSSKNSPGPRSC*ESSLMKPSRSARKTPSKRRSSCRLLDGS 521
A S+ +SPGP SSLM + S + P RR RLLD S
Sbjct: 459 APPSAVSSPGP-----SSLMSLNLSTPEPPLNRRQRRRLLDSS 496
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 318 CSSTKVRSARVSGGSAAPECSKRTLSTCLGRR 223
C+ + +S GS +CS+R C GRR
Sbjct: 643 CADCDIEFGFLSRGSKCVKCSRRLCKKCFGRR 674
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 318 CSSTKVRSARVSGGSAAPECSKRTLSTCLGRR 223
C+ + +S GS +CS+R C GRR
Sbjct: 643 CADCDIEFGFLSRGSKCVKCSRRLCKKCFGRR 674
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 303 PSCCCRTGTSSWRTSPRTCCPSDTSCAP 386
P C C T +P T CP ++C P
Sbjct: 365 PECTCPPTTFPTTRAPNTACPPVSTCPP 392
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 318 CSSTKVRSARVSGGSAAPECSKRTLSTCLGRR 223
C+ + +S GS +CS+R C GRR
Sbjct: 643 CADCDIEFGFLSRGSKCVKCSRRLCKKCFGRR 674
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,547
Number of Sequences: 27780
Number of extensions: 322398
Number of successful extensions: 1195
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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