Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0895
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    28   0.085
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.26 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    24   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 0.085
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -3

Query: 411 FSMRSLPLSVRMMCRLGSRF-LERYATSLCQSCSSTKVRSARVSGGSAAPECSKRTLSTC 235
           F  RS+  +    C+ G+   ++ Y    CQ C   K  +  +      PEC        
Sbjct: 210 FFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMR-----PECVVPEYQCA 264

Query: 234 LGRREARLARRKDSSSAST 178
           + R+E +  + KD  +++T
Sbjct: 265 VKRKEEKAQKEKDKPNSTT 283


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 2   GLDVLYDGDVAGTPHGDPFLWAE-----EAFRTATHVLYAAGPPEH 124
           GL +L + D +G PH      +      E F  +TH++  + PPEH
Sbjct: 19  GLYLLDNNDSSGIPHSAESSASNSPDHYERFSPSTHLMDLSSPPEH 64


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = -3

Query: 432  SSLALVSFSMRSLPLSVRMMCRLGSRF-LERYATSLCQSCSSTKVRSARVSGGSAAPECS 256
            SS   +  SMRS  L +  +CR   R  + R A     S      R    SGG   PE  
Sbjct: 1314 SSQQQIPESMRSKAL-IDQLCRNSRRTPVPRLAQD---SSEDESYRGPSASGGRPVPERP 1369

Query: 255  KRTLSTCLGRREARLARRKDSSSASTS 175
            +R  +  L    +   R  D S   TS
Sbjct: 1370 ERVPTVDLSPSPSDRGRNDDGSDRLTS 1396



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -3

Query: 219 ARLARRKDSSSASTSLCALRMGLS*MLG*RCTCSGGPAAYSTCVAVRKASSAHRKGS 49
           AR   +  S+ AST       G +  L        GPA  S  VA   A++A   G+
Sbjct: 202 ARDESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGT 258


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 698 DTREQSDRGETLRGIICKR 754
           DT+   + GE + GI+CK+
Sbjct: 86  DTKVMVEHGELVMGILCKK 104


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 334 ELVPVLQQHEGPVGAGLRRQRGARVLEAHVE 242
           +  P  Q +EG     L R+RGA++ EA  E
Sbjct: 105 DATPFRQWYEGHYVLPLGRKRGAKLTEAEEE 135


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 343 PLQEPAAQATHHAHREGQGPHRKTHQGQGAVESQV**SHREVREKRL 483
           P   P  ++  H     Q PH +  QGQ   +SQ    H +  E+ +
Sbjct: 158 PDSPPLVESQMHHQMHTQHPHMQPQQGQH--QSQAQQQHLQAHEQHM 202


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = +2

Query: 266 GAALPPETRADRTF-VLLQDWHKLVA------YLSKNLLPKRHIMRTE 388
           G+AL     +DR+  ++LQ W  + A      +L KN++PK  I  +E
Sbjct: 567 GSALGGWHPSDRSARLMLQPWANVFAKGDMEAFLVKNIIPKLQIALSE 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,845
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)