Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0895
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa...    32   0.49 
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put...    31   1.1  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    28   6.1  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    28   8.0  
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta...    28   8.0  
At1g21880.1 68414.m02738 peptidoglycan-binding LysM domain-conta...    28   8.0  

>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 740

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 303 PSCCCRTGTSSWRTSPRTCCPSDTSCAPRGAGTSSKNSPGPRSC*ESSLMKPSRSARKT 479
           PS  CRT  +   T+ +T  P   + +PR +  +  N   PRS  + SL + S   R T
Sbjct: 63  PSLRCRTADAQTPTAEQTSTPRSATKSPRLSLAAISNPSSPRSPLKLSLFRNSFKFRST 121


>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1206

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 343 PLQEPAAQATHHAHREGQGPHRKTHQGQGAVESQV**SHREVREK 477
           PL EPA++A   +   G G H +  Q + +  ++    H E REK
Sbjct: 460 PLLEPASRAPQQSRVNGNGSHNQFQQAEDSTTTEA-DEHDETREK 503


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
 Frame = -3

Query: 552 SAIITQPPPVPSRRGVYRRIFFSKAFFSHFSMASSDLTLNSSLALVSFSMRSLPLSVRMM 373
           S++ T  PP+P+ R   +  F S              T   S A  S ++ SLP S ++ 
Sbjct: 24  SSLHTTDPPIPTPRFRSKFGFLSNPSTPRLRSRGGSGTGCRSSASTSVTIPSLPTSPKLH 83

Query: 372 CRLGSRFLERYATS----LCQSCSSTKVRSARVSGGSAAPECSKRTL 244
           CR  S    R + S       + SS K  S+  S G       + TL
Sbjct: 84  CRTTSNATPRTSNSSSPKFFSNPSSPKSSSSSSSQGGGGVSLLRATL 130


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = -3

Query: 543 ITQPPPVPSRRGVYRRIFFSKAFFSHFSMASSDLTLNSSLALVSFSMRSLPLS 385
           + +PPP       Y R +   + ++HFS ASS L L+SS A  S S  SLP+S
Sbjct: 87  LVRPPPQ-----AYSRPWQQHSSYTHFSSASSPL-LSSSSAPAS-SSSSLPIS 132


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 276 SAAPECSKRTLSTCLGRREARLARRKDSSSASTSL 172
           SAAP  +   L T  GR  + +A   DSS A TSL
Sbjct: 473 SAAPPSASPQLKTHRGRETSGVAVNHDSSKAPTSL 507


>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 416

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 384 VRMMCRLGSRFLERYATSLCQSCSSTKVRSARVSGGS 274
           V+  C LGSR L     SL  SCSS + R++ +  G+
Sbjct: 252 VQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGN 288


>At1g21880.1 68414.m02738 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 316

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 384 VRMMCRLGSRFLERYATSLCQSCSSTKVRSARVSGGS 274
           V+  C LGSR L     SL  SCSS + R++ +  G+
Sbjct: 252 VQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGN 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,803
Number of Sequences: 28952
Number of extensions: 300470
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)